Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02331 and CCNA_02332 are separated by 135 nucleotides CCNA_02332 and CCNA_02333 overlap by 4 nucleotides CCNA_02333 and CCNA_02334 are separated by 117 nucleotides CCNA_02334 and CCNA_02335 are separated by 62 nucleotides
CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827
_02331
CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481
_02332
CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422
_02333
CCNA_02334: CCNA_02334 - transcriptional regulator of stalk biogenesis staR, at 2,475,540 to 2,475,935
_02334
CCNA_02335: CCNA_02335 - inositol monophosphatase family protein, at 2,475,998 to 2,476,834
_02335
Position (kb)
2474
2475
2476 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2473.500 kb on - strand, within CCNA_02331 at 2473.513 kb on + strand, within CCNA_02331 at 2473.607 kb on + strand, within CCNA_02331 at 2473.627 kb on + strand, within CCNA_02331 at 2473.635 kb on - strand, within CCNA_02331 at 2473.651 kb on - strand, within CCNA_02331 at 2473.747 kb on + strand at 2473.755 kb on - strand at 2473.755 kb on - strand at 2473.795 kb on + strand at 2473.800 kb on + strand at 2473.805 kb on + strand at 2473.829 kb on + strand at 2473.914 kb on - strand at 2473.943 kb on + strand at 2474.040 kb on + strand, within CCNA_02332 at 2474.040 kb on + strand, within CCNA_02332 at 2474.048 kb on - strand, within CCNA_02332 at 2474.097 kb on + strand, within CCNA_02332 at 2474.182 kb on + strand, within CCNA_02332 at 2474.189 kb on - strand, within CCNA_02332 at 2474.209 kb on - strand, within CCNA_02332 at 2474.215 kb on - strand, within CCNA_02332 at 2474.281 kb on - strand, within CCNA_02332 at 2474.320 kb on + strand, within CCNA_02332 at 2474.320 kb on + strand, within CCNA_02332 at 2474.331 kb on + strand, within CCNA_02332 at 2474.331 kb on + strand, within CCNA_02332 at 2474.443 kb on + strand at 2474.443 kb on + strand at 2474.482 kb on + strand at 2474.489 kb on + strand at 2474.489 kb on + strand at 2474.529 kb on - strand at 2474.529 kb on - strand at 2474.529 kb on - strand at 2474.544 kb on - strand at 2475.397 kb on + strand at 2475.397 kb on + strand at 2475.397 kb on + strand at 2475.403 kb on + strand at 2475.519 kb on + strand at 2475.519 kb on + strand at 2475.552 kb on + strand at 2475.565 kb on + strand at 2475.565 kb on + strand at 2475.565 kb on + strand at 2475.581 kb on - strand, within CCNA_02334 at 2475.583 kb on - strand, within CCNA_02334 at 2475.600 kb on + strand, within CCNA_02334 at 2475.610 kb on + strand, within CCNA_02334 at 2475.668 kb on - strand, within CCNA_02334 at 2475.723 kb on + strand, within CCNA_02334 at 2475.731 kb on - strand, within CCNA_02334 at 2475.761 kb on + strand, within CCNA_02334 at 2475.770 kb on - strand, within CCNA_02334 at 2475.804 kb on + strand, within CCNA_02334 at 2475.810 kb on + strand, within CCNA_02334 at 2475.834 kb on + strand, within CCNA_02334 at 2475.839 kb on + strand, within CCNA_02334 at 2475.839 kb on + strand, within CCNA_02334 at 2475.847 kb on + strand, within CCNA_02334 at 2475.887 kb on + strand, within CCNA_02334 at 2475.893 kb on + strand, within CCNA_02334 at 2475.962 kb on + strand at 2475.982 kb on + strand at 2475.982 kb on + strand at 2475.990 kb on - strand at 2475.990 kb on - strand at 2475.990 kb on - strand at 2476.054 kb on - strand at 2476.084 kb on + strand, within CCNA_02335 at 2476.094 kb on + strand, within CCNA_02335 at 2476.094 kb on + strand, within CCNA_02335 at 2476.108 kb on + strand, within CCNA_02335 at 2476.121 kb on + strand, within CCNA_02335 at 2476.255 kb on - strand, within CCNA_02335 at 2476.257 kb on - strand, within CCNA_02335 at 2476.282 kb on - strand, within CCNA_02335 at 2476.333 kb on + strand, within CCNA_02335 at 2476.361 kb on - strand, within CCNA_02335 at 2476.396 kb on + strand, within CCNA_02335
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 2,473,500 - CCNA_02331 0.62 -0.3 2,473,513 + CCNA_02331 0.63 +1.5 2,473,607 + CCNA_02331 0.74 -0.2 2,473,627 + CCNA_02331 0.76 -0.0 2,473,635 - CCNA_02331 0.77 -0.8 2,473,651 - CCNA_02331 0.79 +0.6 2,473,747 + -0.7 2,473,755 - -1.1 2,473,755 - +0.5 2,473,795 + +0.2 2,473,800 + +1.2 2,473,805 + +0.8 2,473,829 + +1.1 2,473,914 - -1.7 2,473,943 + +2.2 2,474,040 + CCNA_02332 0.15 +2.4 2,474,040 + CCNA_02332 0.15 +1.1 2,474,048 - CCNA_02332 0.16 +0.7 2,474,097 + CCNA_02332 0.26 +1.2 2,474,182 + CCNA_02332 0.42 +1.7 2,474,189 - CCNA_02332 0.44 -2.1 2,474,209 - CCNA_02332 0.47 -0.1 2,474,215 - CCNA_02332 0.49 -2.4 2,474,281 - CCNA_02332 0.61 -0.3 2,474,320 + CCNA_02332 0.69 +1.1 2,474,320 + CCNA_02332 0.69 +0.1 2,474,331 + CCNA_02332 0.71 +2.3 2,474,331 + CCNA_02332 0.71 +0.8 2,474,443 + +0.9 2,474,443 + +1.5 2,474,482 + -1.4 2,474,489 + +1.1 2,474,489 + +1.6 2,474,529 - +0.6 2,474,529 - +0.7 2,474,529 - -0.1 2,474,544 - +0.8 2,475,397 + +0.3 2,475,397 + -0.7 2,475,397 + +2.7 2,475,403 + +0.7 2,475,519 + -0.5 2,475,519 + -1.3 2,475,552 + +2.1 2,475,565 + -1.2 2,475,565 + +0.5 2,475,565 + -0.1 2,475,581 - CCNA_02334 0.10 +0.2 2,475,583 - CCNA_02334 0.11 -1.4 2,475,600 + CCNA_02334 0.15 +0.7 2,475,610 + CCNA_02334 0.18 +1.8 2,475,668 - CCNA_02334 0.32 +0.5 2,475,723 + CCNA_02334 0.46 +0.6 2,475,731 - CCNA_02334 0.48 +0.5 2,475,761 + CCNA_02334 0.56 -1.7 2,475,770 - CCNA_02334 0.58 -2.4 2,475,804 + CCNA_02334 0.67 -0.2 2,475,810 + CCNA_02334 0.68 +0.1 2,475,834 + CCNA_02334 0.74 +1.3 2,475,839 + CCNA_02334 0.76 -0.2 2,475,839 + CCNA_02334 0.76 +1.2 2,475,847 + CCNA_02334 0.78 +0.6 2,475,887 + CCNA_02334 0.88 +0.1 2,475,893 + CCNA_02334 0.89 +1.5 2,475,962 + +1.7 2,475,982 + +0.5 2,475,982 + +1.2 2,475,990 - +0.3 2,475,990 - -0.0 2,475,990 - -0.2 2,476,054 - +1.0 2,476,084 + CCNA_02335 0.10 -2.3 2,476,094 + CCNA_02335 0.11 -0.0 2,476,094 + CCNA_02335 0.11 +0.3 2,476,108 + CCNA_02335 0.13 -1.3 2,476,121 + CCNA_02335 0.15 -2.4 2,476,255 - CCNA_02335 0.31 -0.7 2,476,257 - CCNA_02335 0.31 -1.1 2,476,282 - CCNA_02335 0.34 +1.1 2,476,333 + CCNA_02335 0.40 -2.2 2,476,361 - CCNA_02335 0.43 -1.0 2,476,396 + CCNA_02335 0.48 -1.7
Or see this region's nucleotide sequence