Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02069

Experiment: Beta-Lactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02067 and CCNA_02068 are separated by 95 nucleotidesCCNA_02068 and CCNA_02069 overlap by 1 nucleotidesCCNA_02069 and CCNA_02070 are separated by 0 nucleotides CCNA_02067: CCNA_02067 - conserved membrane spanning protein, at 2,218,802 to 2,219,416 _02067 CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865 _02068 CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830 _02069 CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429 _02070 Position (kb) 2219 2220 2221Strain fitness (log2 ratio) -1 0 1 2 3at 2218.866 kb on - strandat 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.910 kb on - strand, within CCNA_02067at 2218.926 kb on + strand, within CCNA_02067at 2218.939 kb on - strand, within CCNA_02067at 2219.015 kb on - strand, within CCNA_02067at 2219.026 kb on - strand, within CCNA_02067at 2219.062 kb on - strand, within CCNA_02067at 2219.153 kb on - strand, within CCNA_02067at 2219.188 kb on + strand, within CCNA_02067at 2219.241 kb on + strand, within CCNA_02067at 2219.246 kb on - strand, within CCNA_02067at 2219.264 kb on - strand, within CCNA_02067at 2219.311 kb on - strand, within CCNA_02067at 2219.323 kb on + strand, within CCNA_02067at 2219.461 kb on - strandat 2219.546 kb on - strandat 2219.593 kb on + strand, within CCNA_02068at 2219.619 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.667 kb on - strand, within CCNA_02068at 2219.667 kb on - strand, within CCNA_02068at 2219.667 kb on - strand, within CCNA_02068at 2219.667 kb on - strand, within CCNA_02068at 2219.667 kb on - strand, within CCNA_02068at 2219.754 kb on + strand, within CCNA_02068at 2219.787 kb on + strand, within CCNA_02068at 2220.821 kb on - strandat 2220.821 kb on - strandat 2220.821 kb on - strandat 2220.823 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
remove
2,218,866 - +2.3
2,218,904 - CCNA_02067 0.17 +2.1
2,218,904 - CCNA_02067 0.17 +1.2
2,218,904 - CCNA_02067 0.17 +1.9
2,218,904 - CCNA_02067 0.17 +2.4
2,218,904 - CCNA_02067 0.17 +2.2
2,218,910 - CCNA_02067 0.18 +1.9
2,218,926 + CCNA_02067 0.20 +0.0
2,218,939 - CCNA_02067 0.22 +2.0
2,219,015 - CCNA_02067 0.35 +1.4
2,219,026 - CCNA_02067 0.36 +1.0
2,219,062 - CCNA_02067 0.42 +1.4
2,219,153 - CCNA_02067 0.57 +1.2
2,219,188 + CCNA_02067 0.63 +0.7
2,219,241 + CCNA_02067 0.71 -1.1
2,219,246 - CCNA_02067 0.72 +1.2
2,219,264 - CCNA_02067 0.75 +1.3
2,219,311 - CCNA_02067 0.83 +1.2
2,219,323 + CCNA_02067 0.85 -1.2
2,219,461 - +1.3
2,219,546 - +1.7
2,219,593 + CCNA_02068 0.23 +0.8
2,219,619 + CCNA_02068 0.30 -0.3
2,219,659 + CCNA_02068 0.42 +1.7
2,219,659 + CCNA_02068 0.42 +1.3
2,219,659 + CCNA_02068 0.42 -0.5
2,219,667 - CCNA_02068 0.44 +2.2
2,219,667 - CCNA_02068 0.44 +2.7
2,219,667 - CCNA_02068 0.44 +2.9
2,219,667 - CCNA_02068 0.44 +2.1
2,219,667 - CCNA_02068 0.44 +2.6
2,219,754 + CCNA_02068 0.68 -0.0
2,219,787 + CCNA_02068 0.78 -1.2
2,220,821 - -1.3
2,220,821 - +0.5
2,220,821 - +1.5
2,220,823 - +0.9

Or see this region's nucleotide sequence