Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00935

Experiment: Beta-Lactose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose (C)
1,009,697	-		CCNA_00933	0.77	+0.7
1,009,698	-		CCNA_00933	0.77	-2.3
1,009,795	+		CCNA_00933	0.84	+1.3
1,009,803	-		CCNA_00933	0.84	+2.6
1,009,823	+		CCNA_00933	0.86	+0.7
1,009,824	-		CCNA_00933	0.86	+0.5
1,009,840	+		CCNA_00933	0.87	+1.8
1,009,848	-		CCNA_00933	0.88	-2.7
1,009,855	+		CCNA_00933	0.88	+2.0
1,009,887	-				-0.9
1,009,934	-				-0.2
1,009,939	-				+0.6
1,009,939	-				-0.1
1,009,939	-				+1.2
1,009,939	-				-0.3
1,009,949	+				+1.7
1,009,957	-				-2.7
1,010,056	+				+1.5
1,010,064	-				-0.6
1,010,099	-				-0.5
1,010,155	+		CCNA_00934	0.16	+0.2
1,010,163	-		CCNA_00934	0.17	-0.5
1,010,173	-		CCNA_00934	0.19	-1.7
1,010,173	-		CCNA_00934	0.19	-1.0
1,010,182	+		CCNA_00934	0.21	+2.0
1,010,187	+		CCNA_00934	0.22	+0.4
1,010,190	-		CCNA_00934	0.22	-1.1
1,010,210	-		CCNA_00934	0.26	-0.5
1,010,316	-		CCNA_00934	0.47	-1.8
1,010,318	+		CCNA_00934	0.47	+0.7
1,010,326	-		CCNA_00934	0.48	-2.1
1,010,373	+		CCNA_00934	0.57	-0.7
1,010,381	-		CCNA_00934	0.59	-1.4
1,010,381	-		CCNA_00934	0.59	+0.3
1,010,399	+		CCNA_00934	0.62	+2.0
1,010,417	+		CCNA_00934	0.66	+1.3
1,010,445	+		CCNA_00934	0.71	-0.0
1,010,445	+		CCNA_00934	0.71	-0.1
1,010,450	+		CCNA_00934	0.72	+3.1
1,010,450	+		CCNA_00934	0.72	+0.4
1,010,450	+		CCNA_00934	0.72	+1.3
1,010,450	+		CCNA_00934	0.72	-0.4
1,010,450	+		CCNA_00934	0.72	+0.7
1,010,472	-		CCNA_00934	0.76	-0.4
1,010,504	+		CCNA_00934	0.83	+1.4
1,010,504	+		CCNA_00934	0.83	+1.1
1,010,521	-		CCNA_00934	0.86	-1.7
1,010,550	+				+0.2
1,010,585	-				-1.4
1,010,596	-				+0.6
1,010,596	-				+0.6
1,010,596	-				-0.3
1,010,649	-				-0.7
1,010,660	+				-0.3
1,010,663	-				-0.4
1,010,665	+				+0.2
1,010,784	-				-1.6
1,010,789	+				-0.1
1,010,797	-		CCNA_00935	0.11	+1.1
1,010,797	-		CCNA_00935	0.11	+2.6
1,010,803	-		CCNA_00935	0.11	+0.0
1,010,803	-		CCNA_00935	0.11	-2.5
1,010,881	+		CCNA_00935	0.19	+2.3
1,010,918	-		CCNA_00935	0.23	-1.9
1,010,918	-		CCNA_00935	0.23	-0.3
1,010,933	-		CCNA_00935	0.24	-0.8
1,010,938	-		CCNA_00935	0.25	-2.1
1,010,968	+		CCNA_00935	0.28	+0.1
1,010,985	+		CCNA_00935	0.30	-1.1
1,010,985	+		CCNA_00935	0.30	+0.2
1,010,993	-		CCNA_00935	0.30	+0.7
1,010,993	-		CCNA_00935	0.30	-1.5
1,010,993	-		CCNA_00935	0.30	-2.3
1,010,993	-		CCNA_00935	0.30	-0.2
1,010,995	+		CCNA_00935	0.31	-1.3
1,011,091	-		CCNA_00935	0.40	+0.4
1,011,112	-		CCNA_00935	0.42	-1.6
1,011,164	+		CCNA_00935	0.48	-1.5
1,011,172	-		CCNA_00935	0.49	-2.5
1,011,179	-		CCNA_00935	0.49	-0.6
1,011,181	-		CCNA_00935	0.49	-1.0
1,011,194	-		CCNA_00935	0.51	+0.0
1,011,207	+		CCNA_00935	0.52	+0.9
1,011,207	+		CCNA_00935	0.52	-1.1
1,011,239	+		CCNA_00935	0.55	-0.7
1,011,247	-		CCNA_00935	0.56	-0.2
1,011,247	-		CCNA_00935	0.56	+0.8
1,011,264	-		CCNA_00935	0.58	-2.0
1,011,286	-		CCNA_00935	0.60	+1.2
1,011,293	-		CCNA_00935	0.61	+0.1
1,011,314	-		CCNA_00935	0.63	-0.9
1,011,314	-		CCNA_00935	0.63	-2.8
1,011,324	+		CCNA_00935	0.64	-0.7
1,011,324	+		CCNA_00935	0.64	-0.4
1,011,327	-		CCNA_00935	0.64	-1.3
1,011,343	+		CCNA_00935	0.66	-0.5
1,011,344	+		CCNA_00935	0.66	-1.2
1,011,351	-		CCNA_00935	0.67	-1.9
1,011,352	-		CCNA_00935	0.67	-1.8
1,011,352	-		CCNA_00935	0.67	+1.6
1,011,352	-		CCNA_00935	0.67	-2.1
1,011,352	-		CCNA_00935	0.67	-0.5
1,011,352	-		CCNA_00935	0.67	+1.3
1,011,352	-		CCNA_00935	0.67	-0.3
1,011,359	+		CCNA_00935	0.67	+0.3
1,011,374	-		CCNA_00935	0.69	-0.3
1,011,424	-		CCNA_00935	0.74	-0.8
1,011,462	+		CCNA_00935	0.78	+0.0
1,011,470	-		CCNA_00935	0.79	-0.1
1,011,470	-		CCNA_00935	0.79	-0.4
1,011,487	+		CCNA_00935	0.80	-2.5
1,011,487	+		CCNA_00935	0.80	-1.8
1,011,489	-		CCNA_00935	0.81	-1.2
1,011,495	-		CCNA_00935	0.81	+0.5
1,011,547	+		CCNA_00935	0.87	+1.0
1,011,553	+		CCNA_00935	0.87	+1.0
1,011,553	+		CCNA_00935	0.87	-0.0
1,011,662	-				+0.1
1,011,662	-				+0.2
1,011,669	-				+0.3
1,011,693	-				+0.4
1,011,697	-				+0.6
1,011,699	+				-0.1
1,011,726	-				+0.0
1,011,741	+				+1.1
1,011,794	-				+0.6
1,011,841	+				-1.0
1,011,853	-				-1.5
1,011,853	-				+0.3
1,011,894	+		CCNA_00936	0.10	+1.0
1,011,894	+		CCNA_00936	0.10	-0.2
1,011,900	+		CCNA_00936	0.11	+0.3
1,011,902	-		CCNA_00936	0.11	-0.7
1,011,902	-		CCNA_00936	0.11	+0.4
1,011,913	-		CCNA_00936	0.12	-0.9
1,012,021	-		CCNA_00936	0.25	-2.3
1,012,028	+		CCNA_00936	0.26	-1.6
1,012,070	-		CCNA_00936	0.31	-1.0
1,012,076	+		CCNA_00936	0.32	-0.4
1,012,148	+		CCNA_00936	0.40	-0.7
1,012,163	+		CCNA_00936	0.42	+0.5
1,012,201	+		CCNA_00936	0.47	+0.6
1,012,209	-		CCNA_00936	0.47	-1.9
1,012,213	+		CCNA_00936	0.48	-0.3
1,012,220	-		CCNA_00936	0.49	+1.6
1,012,251	+		CCNA_00936	0.53	-0.3
1,012,301	-		CCNA_00936	0.58	+1.0
1,012,317	+		CCNA_00936	0.60	+0.3
1,012,335	+		CCNA_00936	0.62	+1.6
1,012,360	+		CCNA_00936	0.65	-1.0
1,012,404	+		CCNA_00936	0.71	+1.0
1,012,524	+		CCNA_00936	0.85	-1.7
1,012,524	+		CCNA_00936	0.85	+0.9
1,012,529	+		CCNA_00936	0.86	-0.0
1,012,532	-		CCNA_00936	0.86	+1.1
1,012,541	+		CCNA_00936	0.87	-1.0
1,012,549	-		CCNA_00936	0.88	-0.7
1,012,587	-				+0.5
1,012,587	-				-0.1
1,012,599	-				+0.6
1,012,607	+				-0.9
1,012,615	-				+1.1
1,012,617	+				-1.0
1,012,635	-				-0.3
1,012,636	+				+0.1
1,012,636	+				+1.0
1,012,657	+				-1.3
1,012,666	+				+1.4
1,012,667	+				+0.0
1,012,674	-				-0.9
1,012,676	+				-1.6