Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00571 and CCNA_00572 overlap by 4 nucleotides CCNA_00572 and CCNA_00573 are separated by 315 nucleotides
CCNA_00571: CCNA_00571 - phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit, at 589,132 to 591,768
_00571
CCNA_00572: CCNA_00572 - PTS system, N-acetylglucosamine-specific IIBC component, at 591,765 to 593,513
_00572
CCNA_00573: CCNA_00573 - TonB-dependent receptor, at 593,829 to 596,600
_00573
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 593.373 kb on + strand at 593.383 kb on + strand at 593.391 kb on - strand at 593.416 kb on + strand at 593.416 kb on + strand at 593.422 kb on - strand at 593.424 kb on - strand at 593.452 kb on + strand at 593.452 kb on + strand at 593.474 kb on + strand at 593.551 kb on - strand at 593.551 kb on - strand at 593.551 kb on - strand at 593.551 kb on - strand at 593.551 kb on - strand at 593.551 kb on - strand at 593.551 kb on - strand at 593.558 kb on + strand at 593.566 kb on + strand at 593.805 kb on + strand at 593.808 kb on + strand at 593.913 kb on - strand at 593.982 kb on + strand at 593.984 kb on + strand at 593.984 kb on + strand at 593.984 kb on + strand at 593.984 kb on + strand at 593.992 kb on - strand at 594.013 kb on + strand at 594.021 kb on - strand at 594.025 kb on - strand at 594.045 kb on + strand at 594.074 kb on - strand at 594.098 kb on - strand at 594.116 kb on + strand, within CCNA_00573 at 594.116 kb on + strand, within CCNA_00573 at 594.124 kb on - strand, within CCNA_00573 at 594.124 kb on - strand, within CCNA_00573 at 594.221 kb on - strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.284 kb on + strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.303 kb on + strand, within CCNA_00573 at 594.303 kb on + strand, within CCNA_00573 at 594.311 kb on - strand, within CCNA_00573 at 594.321 kb on - strand, within CCNA_00573 at 594.372 kb on + strand, within CCNA_00573 at 594.386 kb on - strand, within CCNA_00573 at 594.408 kb on - strand, within CCNA_00573 at 594.427 kb on - strand, within CCNA_00573 at 594.434 kb on + strand, within CCNA_00573 at 594.439 kb on + strand, within CCNA_00573 at 594.442 kb on - strand, within CCNA_00573 at 594.442 kb on - strand at 594.450 kb on - strand, within CCNA_00573 at 594.504 kb on + strand, within CCNA_00573
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 593,373 + -0.8 593,383 + -0.8 593,391 - -1.2 593,416 + +1.0 593,416 + +0.9 593,422 - -2.0 593,424 - -0.2 593,452 + -1.9 593,452 + +1.6 593,474 + +0.4 593,551 - +1.2 593,551 - -0.2 593,551 - -0.2 593,551 - +2.6 593,551 - -0.6 593,551 - +0.1 593,551 - +0.6 593,558 + -1.9 593,566 + -0.1 593,805 + +0.2 593,808 + -1.7 593,913 - -1.4 593,982 + -1.4 593,984 + -0.6 593,984 + -0.9 593,984 + -2.7 593,984 + -1.4 593,992 - -1.7 594,013 + -1.4 594,021 - +1.3 594,025 - -2.4 594,045 + -2.0 594,074 - -0.4 594,098 - -0.2 594,116 + CCNA_00573 0.10 -0.0 594,116 + CCNA_00573 0.10 -1.5 594,124 - CCNA_00573 0.11 -1.0 594,124 - CCNA_00573 0.11 -0.9 594,221 - CCNA_00573 0.14 -3.0 594,279 + CCNA_00573 0.16 -1.2 594,279 + CCNA_00573 0.16 -0.9 594,284 + CCNA_00573 0.16 -2.0 594,287 - CCNA_00573 0.17 -1.3 594,287 - CCNA_00573 0.17 -2.4 594,287 - CCNA_00573 0.17 -1.6 594,287 - CCNA_00573 0.17 -1.0 594,287 - CCNA_00573 0.17 +0.3 594,287 - CCNA_00573 0.17 -1.9 594,303 + CCNA_00573 0.17 +0.6 594,303 + CCNA_00573 0.17 +0.1 594,311 - CCNA_00573 0.17 -0.1 594,321 - CCNA_00573 0.18 -1.7 594,372 + CCNA_00573 0.20 -2.2 594,386 - CCNA_00573 0.20 -1.6 594,408 - CCNA_00573 0.21 +0.9 594,427 - CCNA_00573 0.22 -1.4 594,434 + CCNA_00573 0.22 -2.4 594,439 + CCNA_00573 0.22 -0.9 594,442 - CCNA_00573 0.22 +1.0 594,442 - +1.2 594,450 - CCNA_00573 0.22 +0.4 594,504 + CCNA_00573 0.24 -0.6
Or see this region's nucleotide sequence