Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00422 and CCNA_03919 are separated by 1 nucleotides CCNA_03919 and CCNA_00423 are separated by 233 nucleotides CCNA_00423 and CCNA_00424 are separated by 246 nucleotides
CCNA_00422: CCNA_00422 - SDR pteridine reductase, at 432,336 to 433,088
_00422
CCNA_03919: CCNA_03919 - hypothetical protein, at 433,090 to 433,170
_03919
CCNA_00423: CCNA_00423 - phosphohydrolase, MutT-nudix family, at 433,404 to 433,874
_00423
CCNA_00424: CCNA_00424 - aldehyde dehydrogenase, at 434,121 to 435,560
_00424
Position (kb) 433
434 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 432.404 kb on - strand at 432.435 kb on - strand, within CCNA_00422 at 432.452 kb on + strand, within CCNA_00422 at 432.460 kb on - strand, within CCNA_00422 at 432.533 kb on + strand, within CCNA_00422 at 432.536 kb on - strand, within CCNA_00422 at 432.545 kb on + strand, within CCNA_00422 at 432.587 kb on - strand, within CCNA_00422 at 432.588 kb on - strand at 432.591 kb on + strand, within CCNA_00422 at 432.591 kb on + strand, within CCNA_00422 at 432.598 kb on - strand, within CCNA_00422 at 432.616 kb on + strand, within CCNA_00422 at 432.621 kb on + strand, within CCNA_00422 at 432.626 kb on + strand, within CCNA_00422 at 432.724 kb on + strand, within CCNA_00422 at 432.732 kb on - strand, within CCNA_00422 at 432.760 kb on - strand, within CCNA_00422 at 432.793 kb on + strand, within CCNA_00422 at 432.824 kb on - strand, within CCNA_00422 at 432.903 kb on - strand, within CCNA_00422 at 432.920 kb on - strand, within CCNA_00422 at 432.944 kb on - strand, within CCNA_00422 at 432.963 kb on + strand, within CCNA_00422 at 432.984 kb on + strand, within CCNA_00422 at 433.007 kb on - strand, within CCNA_00422 at 433.039 kb on - strand at 433.062 kb on + strand at 433.067 kb on + strand at 433.070 kb on - strand at 433.070 kb on - strand at 433.070 kb on - strand at 433.070 kb on - strand at 433.075 kb on - strand at 433.102 kb on + strand, within CCNA_03919 at 433.116 kb on + strand, within CCNA_03919 at 433.124 kb on - strand, within CCNA_03919 at 433.125 kb on - strand, within CCNA_03919 at 433.136 kb on + strand, within CCNA_03919 at 433.136 kb on + strand, within CCNA_03919 at 433.144 kb on - strand, within CCNA_03919 at 433.144 kb on - strand, within CCNA_03919 at 433.148 kb on - strand, within CCNA_03919 at 433.172 kb on + strand at 433.205 kb on - strand at 433.233 kb on - strand at 433.245 kb on + strand at 433.253 kb on - strand at 433.264 kb on + strand at 433.268 kb on - strand at 433.268 kb on - strand at 433.304 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.319 kb on + strand at 433.338 kb on + strand at 433.338 kb on + strand at 433.338 kb on + strand at 433.338 kb on + strand at 433.346 kb on - strand at 433.346 kb on - strand at 433.378 kb on + strand at 433.390 kb on + strand at 433.390 kb on + strand at 433.397 kb on - strand at 433.406 kb on + strand at 433.406 kb on + strand at 433.414 kb on - strand at 433.445 kb on + strand at 433.445 kb on + strand at 433.452 kb on + strand, within CCNA_00423 at 433.453 kb on - strand, within CCNA_00423 at 433.453 kb on - strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.482 kb on - strand, within CCNA_00423 at 433.514 kb on + strand, within CCNA_00423 at 433.514 kb on + strand, within CCNA_00423 at 433.522 kb on - strand, within CCNA_00423 at 433.538 kb on + strand, within CCNA_00423 at 433.541 kb on - strand, within CCNA_00423 at 433.546 kb on - strand, within CCNA_00423 at 433.552 kb on - strand, within CCNA_00423 at 433.559 kb on - strand, within CCNA_00423 at 433.560 kb on - strand, within CCNA_00423 at 433.668 kb on + strand, within CCNA_00423 at 433.683 kb on + strand, within CCNA_00423 at 433.696 kb on - strand, within CCNA_00423 at 433.707 kb on + strand, within CCNA_00423 at 433.707 kb on + strand, within CCNA_00423 at 433.741 kb on + strand, within CCNA_00423 at 433.749 kb on - strand, within CCNA_00423 at 433.815 kb on - strand, within CCNA_00423 at 433.839 kb on + strand at 433.844 kb on + strand at 433.846 kb on + strand at 433.851 kb on + strand at 433.851 kb on + strand at 433.855 kb on + strand at 433.859 kb on - strand at 433.863 kb on - strand at 433.870 kb on + strand at 433.873 kb on - strand at 433.875 kb on + strand at 433.878 kb on + strand at 433.899 kb on - strand at 433.915 kb on - strand at 433.925 kb on - strand at 433.926 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.965 kb on - strand at 433.965 kb on - strand at 433.965 kb on - strand at 433.996 kb on + strand at 433.997 kb on - strand at 434.033 kb on + strand at 434.041 kb on - strand at 434.041 kb on - strand at 434.041 kb on - strand at 434.060 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.113 kb on - strand at 434.113 kb on - strand at 434.113 kb on - strand at 434.128 kb on + strand at 434.138 kb on + strand at 434.146 kb on - strand at 434.206 kb on + strand at 434.213 kb on + strand at 434.213 kb on + strand at 434.247 kb on + strand at 434.258 kb on + strand at 434.260 kb on - strand at 434.282 kb on - strand, within CCNA_00424 at 434.288 kb on - strand, within CCNA_00424 at 434.296 kb on + strand, within CCNA_00424 at 434.303 kb on - strand, within CCNA_00424 at 434.305 kb on + strand, within CCNA_00424 at 434.305 kb on + strand, within CCNA_00424 at 434.305 kb on + strand, within CCNA_00424 at 434.357 kb on - strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.386 kb on - strand, within CCNA_00424 at 434.410 kb on + strand, within CCNA_00424 at 434.410 kb on + strand, within CCNA_00424 at 434.434 kb on + strand, within CCNA_00424 at 434.446 kb on + strand, within CCNA_00424 at 434.451 kb on + strand, within CCNA_00424 at 434.451 kb on + strand, within CCNA_00424 at 434.451 kb on + strand, within CCNA_00424 at 434.454 kb on - strand, within CCNA_00424 at 434.454 kb on - strand, within CCNA_00424 at 434.458 kb on - strand, within CCNA_00424 at 434.459 kb on - strand, within CCNA_00424 at 434.471 kb on + strand, within CCNA_00424 at 434.523 kb on + strand, within CCNA_00424 at 434.549 kb on - strand, within CCNA_00424 at 434.553 kb on + strand, within CCNA_00424 at 434.561 kb on - strand, within CCNA_00424 at 434.622 kb on + strand, within CCNA_00424 at 434.624 kb on + strand, within CCNA_00424 at 434.624 kb on + strand, within CCNA_00424 at 434.624 kb on + strand, within CCNA_00424 at 434.631 kb on + strand, within CCNA_00424 at 434.632 kb on - strand, within CCNA_00424 at 434.691 kb on - strand at 434.713 kb on - strand, within CCNA_00424 at 434.714 kb on + strand, within CCNA_00424 at 434.722 kb on - strand, within CCNA_00424 at 434.795 kb on - strand, within CCNA_00424 at 434.803 kb on + strand, within CCNA_00424 at 434.814 kb on + strand, within CCNA_00424 at 434.847 kb on + strand, within CCNA_00424 at 434.848 kb on + strand, within CCNA_00424 at 434.848 kb on + strand, within CCNA_00424 at 434.853 kb on + strand, within CCNA_00424 at 434.856 kb on - strand, within CCNA_00424 at 434.870 kb on + strand, within CCNA_00424 at 434.871 kb on + strand, within CCNA_00424
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 432,404 - -0.3 432,435 - CCNA_00422 0.13 +1.8 432,452 + CCNA_00422 0.15 -1.3 432,460 - CCNA_00422 0.16 +0.6 432,533 + CCNA_00422 0.26 -0.6 432,536 - CCNA_00422 0.27 -0.1 432,545 + CCNA_00422 0.28 +0.4 432,587 - CCNA_00422 0.33 +1.7 432,588 - +0.7 432,591 + CCNA_00422 0.34 +0.4 432,591 + CCNA_00422 0.34 -1.1 432,598 - CCNA_00422 0.35 +0.9 432,616 + CCNA_00422 0.37 +0.5 432,621 + CCNA_00422 0.38 +0.9 432,626 + CCNA_00422 0.39 -0.4 432,724 + CCNA_00422 0.52 +0.7 432,732 - CCNA_00422 0.53 +0.4 432,760 - CCNA_00422 0.56 +1.3 432,793 + CCNA_00422 0.61 -0.9 432,824 - CCNA_00422 0.65 +0.9 432,903 - CCNA_00422 0.75 +1.2 432,920 - CCNA_00422 0.78 +1.9 432,944 - CCNA_00422 0.81 +1.3 432,963 + CCNA_00422 0.83 +0.7 432,984 + CCNA_00422 0.86 +1.5 433,007 - CCNA_00422 0.89 +1.3 433,039 - +1.3 433,062 + +0.2 433,067 + -1.3 433,070 - +2.0 433,070 - -2.9 433,070 - +1.6 433,070 - +1.9 433,075 - +1.3 433,102 + CCNA_03919 0.15 -1.6 433,116 + CCNA_03919 0.32 -0.3 433,124 - CCNA_03919 0.42 +3.3 433,125 - CCNA_03919 0.43 -4.0 433,136 + CCNA_03919 0.57 +0.7 433,136 + CCNA_03919 0.57 -2.1 433,144 - CCNA_03919 0.67 +2.2 433,144 - CCNA_03919 0.67 +0.9 433,148 - CCNA_03919 0.72 +1.3 433,172 + -0.7 433,205 - +1.3 433,233 - +0.9 433,245 + -1.0 433,253 - -2.3 433,264 + +0.4 433,268 - +0.6 433,268 - -3.7 433,304 + +0.4 433,306 + -1.9 433,306 + -1.0 433,306 + +2.5 433,306 + -0.7 433,306 + -1.8 433,319 + +0.5 433,338 + -1.2 433,338 + -1.0 433,338 + +1.9 433,338 + +0.5 433,346 - +0.8 433,346 - -1.6 433,378 + -1.4 433,390 + -0.8 433,390 + +1.7 433,397 - +0.5 433,406 + -0.5 433,406 + -0.1 433,414 - -1.9 433,445 + -1.7 433,445 + -1.0 433,452 + CCNA_00423 0.10 +0.1 433,453 - CCNA_00423 0.10 -1.9 433,453 - CCNA_00423 0.10 -1.0 433,474 + CCNA_00423 0.15 -0.4 433,474 + CCNA_00423 0.15 -0.3 433,474 + CCNA_00423 0.15 -1.6 433,474 + CCNA_00423 0.15 +0.0 433,474 + CCNA_00423 0.15 -1.8 433,474 + CCNA_00423 0.15 -0.7 433,474 + CCNA_00423 0.15 -2.1 433,482 - CCNA_00423 0.17 -1.0 433,514 + CCNA_00423 0.23 -0.2 433,514 + CCNA_00423 0.23 +0.5 433,522 - CCNA_00423 0.25 -0.0 433,538 + CCNA_00423 0.28 -0.2 433,541 - CCNA_00423 0.29 +1.0 433,546 - CCNA_00423 0.30 +1.8 433,552 - CCNA_00423 0.31 -0.1 433,559 - CCNA_00423 0.33 +0.1 433,560 - CCNA_00423 0.33 -2.9 433,668 + CCNA_00423 0.56 +0.2 433,683 + CCNA_00423 0.59 -1.6 433,696 - CCNA_00423 0.62 -1.6 433,707 + CCNA_00423 0.64 -0.1 433,707 + CCNA_00423 0.64 +0.2 433,741 + CCNA_00423 0.72 -1.4 433,749 - CCNA_00423 0.73 -2.8 433,815 - CCNA_00423 0.87 +0.9 433,839 + +0.5 433,844 + +1.0 433,846 + -0.8 433,851 + +0.8 433,851 + +0.5 433,855 + +0.2 433,859 - -2.6 433,863 - +1.1 433,870 + +0.3 433,873 - +0.1 433,875 + +0.9 433,878 + -0.0 433,899 - +0.7 433,915 - -0.1 433,925 - -1.0 433,926 + +0.0 433,949 + -0.4 433,949 + -1.8 433,949 + -1.2 433,949 + -2.5 433,949 + -0.6 433,949 + -3.7 433,957 - +0.5 433,957 - +0.0 433,957 - -0.8 433,957 - +0.2 433,957 - -1.4 433,957 - -0.3 433,965 - +1.0 433,965 - +0.4 433,965 - -0.2 433,996 + +1.7 433,997 - -1.6 434,033 + +1.4 434,041 - -0.1 434,041 - -2.2 434,041 - +0.0 434,060 + -0.5 434,105 + +1.4 434,105 + +1.2 434,105 + +1.1 434,105 + +1.1 434,105 + -0.5 434,113 - -0.3 434,113 - +0.5 434,113 - -0.4 434,128 + -2.8 434,138 + -1.4 434,146 - -0.4 434,206 + -1.2 434,213 + +0.6 434,213 + +0.3 434,247 + +0.6 434,258 + +1.1 434,260 - -0.9 434,282 - CCNA_00424 0.11 -1.4 434,288 - CCNA_00424 0.12 -3.1 434,296 + CCNA_00424 0.12 +1.0 434,303 - CCNA_00424 0.13 +0.4 434,305 + CCNA_00424 0.13 +1.8 434,305 + CCNA_00424 0.13 -0.0 434,305 + CCNA_00424 0.13 -0.1 434,357 - CCNA_00424 0.16 -0.6 434,372 + CCNA_00424 0.17 +0.8 434,372 + CCNA_00424 0.17 -0.3 434,372 + CCNA_00424 0.17 +0.1 434,372 + CCNA_00424 0.17 +0.2 434,372 + CCNA_00424 0.17 -0.4 434,386 - CCNA_00424 0.18 +0.5 434,410 + CCNA_00424 0.20 +1.5 434,410 + CCNA_00424 0.20 +2.7 434,434 + CCNA_00424 0.22 +0.2 434,446 + CCNA_00424 0.23 +1.0 434,451 + CCNA_00424 0.23 +0.4 434,451 + CCNA_00424 0.23 +0.6 434,451 + CCNA_00424 0.23 +0.7 434,454 - CCNA_00424 0.23 -0.1 434,454 - CCNA_00424 0.23 -0.8 434,458 - CCNA_00424 0.23 -2.7 434,459 - CCNA_00424 0.23 -1.0 434,471 + CCNA_00424 0.24 +0.8 434,523 + CCNA_00424 0.28 +0.8 434,549 - CCNA_00424 0.30 -1.3 434,553 + CCNA_00424 0.30 +0.4 434,561 - CCNA_00424 0.31 -0.1 434,622 + CCNA_00424 0.35 +1.5 434,624 + CCNA_00424 0.35 +1.1 434,624 + CCNA_00424 0.35 +1.4 434,624 + CCNA_00424 0.35 +1.3 434,631 + CCNA_00424 0.35 +0.4 434,632 - CCNA_00424 0.35 -1.5 434,691 - +1.7 434,713 - CCNA_00424 0.41 +2.0 434,714 + CCNA_00424 0.41 +0.5 434,722 - CCNA_00424 0.42 -0.8 434,795 - CCNA_00424 0.47 -1.5 434,803 + CCNA_00424 0.47 +0.7 434,814 + CCNA_00424 0.48 +1.8 434,847 + CCNA_00424 0.50 +0.4 434,848 + CCNA_00424 0.50 +1.9 434,848 + CCNA_00424 0.50 +0.1 434,853 + CCNA_00424 0.51 +0.5 434,856 - CCNA_00424 0.51 +0.5 434,870 + CCNA_00424 0.52 +0.1 434,871 + CCNA_00424 0.52 +0.8
Or see this region's nucleotide sequence