Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33980

Experiment: Paraquat dichloride 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.032 mg/ml
3,213,550	+		BPHYT_RS33975	0.35	-0.7
3,213,551	-		BPHYT_RS33975	0.35	-1.6
3,213,551	-		BPHYT_RS33975	0.35	-1.2
3,213,551	-		BPHYT_RS33975	0.35	-1.5
3,213,551	-		BPHYT_RS33975	0.35	-0.3
3,213,551	-		BPHYT_RS33975	0.35	-2.1
3,213,807	+		BPHYT_RS33975	0.53	-1.6
3,214,083	+		BPHYT_RS33975	0.72	+0.7
3,214,083	+		BPHYT_RS33975	0.72	-0.6
3,214,083	+		BPHYT_RS33975	0.72	-0.6
3,214,131	+		BPHYT_RS33975	0.75	-0.7
3,214,218	+		BPHYT_RS33975	0.81	+0.2
3,214,297	+		BPHYT_RS33975	0.87	-0.6
3,214,297	+		BPHYT_RS33975	0.87	-0.2
3,214,464	+				+0.8
3,214,464	+				-0.4
3,214,477	-				-0.5
3,214,485	+				+2.0
3,214,486	-				-0.7
3,214,486	-				-3.2
3,214,490	-				-0.8
3,214,492	+				+0.1
3,214,493	-				+0.8
3,214,493	-				-1.2
3,214,497	+				-0.6
3,214,590	+				-1.6
3,214,591	-				-2.1
3,214,680	-				-0.8
3,214,684	-				-0.7
3,215,085	+		BPHYT_RS33980	0.21	-0.8
3,215,086	-		BPHYT_RS33980	0.21	-3.0
3,215,134	-		BPHYT_RS33980	0.22	-2.3
3,215,134	-		BPHYT_RS33980	0.22	-0.5
3,215,136	+		BPHYT_RS33980	0.22	-2.3
3,215,136	+		BPHYT_RS33980	0.22	-0.3
3,215,253	+		BPHYT_RS33980	0.27	-0.8
3,215,253	+		BPHYT_RS33980	0.27	-1.6
3,215,254	-		BPHYT_RS33980	0.27	-0.2
3,215,455	-		BPHYT_RS33980	0.34	-2.7
3,215,502	+		BPHYT_RS33980	0.36	-1.3
3,215,553	+		BPHYT_RS33980	0.38	+0.4
3,215,554	-		BPHYT_RS33980	0.38	-1.4
3,215,604	+		BPHYT_RS33980	0.40	+0.1
3,215,605	-		BPHYT_RS33980	0.40	+0.4
3,215,779	-		BPHYT_RS33980	0.46	-2.1
3,215,974	-		BPHYT_RS33980	0.53	-0.0
3,216,001	-		BPHYT_RS33980	0.54	-1.7
3,216,034	-		BPHYT_RS33980	0.55	-2.1
3,216,140	+		BPHYT_RS33980	0.59	-1.6
3,216,141	-		BPHYT_RS33980	0.59	-0.2
3,216,141	-		BPHYT_RS33980	0.59	-0.6
3,216,199	+		BPHYT_RS33980	0.62	-1.2
3,216,281	+		BPHYT_RS33980	0.65	-2.3
3,216,285	+		BPHYT_RS33980	0.65	-1.3
3,216,286	-		BPHYT_RS33980	0.65	-0.1
3,216,286	-		BPHYT_RS33980	0.65	-0.9
3,216,369	+		BPHYT_RS33980	0.68	-0.5
3,216,454	-		BPHYT_RS33980	0.71	-1.9
3,216,832	-		BPHYT_RS33980	0.85	-2.3
3,216,876	+		BPHYT_RS33980	0.86	-0.2
3,216,932	+		BPHYT_RS33980	0.88	-2.6
3,216,933	-		BPHYT_RS33980	0.89	-0.3
3,217,060	-				-0.7
3,217,247	+				-1.0
3,217,248	-				+0.3
3,217,256	-				-0.1
3,217,505	+		BPHYT_RS33985	0.14	-0.1
3,217,657	+		BPHYT_RS33985	0.28	+0.1
3,217,817	-		BPHYT_RS33985	0.43	-0.6
3,217,817	-		BPHYT_RS33985	0.43	+0.1
3,217,915	+		BPHYT_RS33985	0.52	-0.1
3,217,916	-		BPHYT_RS33985	0.52	+0.4
3,217,979	+		BPHYT_RS33985	0.58	+0.4
3,218,054	-		BPHYT_RS33985	0.65	+0.1
3,218,054	-		BPHYT_RS33985	0.65	-1.1
3,218,133	+		BPHYT_RS33985	0.72	+0.1