Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28995

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28985 and BPHYT_RS28990 are separated by 378 nucleotidesBPHYT_RS28990 and BPHYT_RS28995 are separated by 43 nucleotidesBPHYT_RS28995 and BPHYT_RS29000 overlap by 4 nucleotidesBPHYT_RS29000 and BPHYT_RS29005 are separated by 21 nucleotides BPHYT_RS28985: BPHYT_RS28985 - hypothetical protein, at 2,059,118 to 2,059,858 _RS28985 BPHYT_RS28990: BPHYT_RS28990 - hypothetical protein, at 2,060,237 to 2,060,503 _RS28990 BPHYT_RS28995: BPHYT_RS28995 - histidine kinase, at 2,060,547 to 2,061,902 _RS28995 BPHYT_RS29000: BPHYT_RS29000 - transcriptional regulator, at 2,061,899 to 2,062,612 _RS29000 BPHYT_RS29005: BPHYT_RS29005 - transporter, at 2,062,634 to 2,065,765 _RS29005 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -2 -1 0 1at 2059.577 kb on + strand, within BPHYT_RS28985at 2059.617 kb on - strand, within BPHYT_RS28985at 2059.617 kb on - strand, within BPHYT_RS28985at 2059.817 kb on + strandat 2059.997 kb on + strandat 2060.050 kb on + strandat 2060.050 kb on + strandat 2060.779 kb on + strand, within BPHYT_RS28995at 2060.780 kb on - strand, within BPHYT_RS28995at 2061.737 kb on - strand, within BPHYT_RS28995at 2061.785 kb on - strandat 2061.888 kb on + strandat 2061.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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2,059,577 + BPHYT_RS28985 0.62 -0.3
2,059,617 - BPHYT_RS28985 0.67 +1.1
2,059,617 - BPHYT_RS28985 0.67 -1.8
2,059,817 + -0.4
2,059,997 + -0.3
2,060,050 + +0.1
2,060,050 + +0.5
2,060,779 + BPHYT_RS28995 0.17 -0.7
2,060,780 - BPHYT_RS28995 0.17 -1.7
2,061,737 - BPHYT_RS28995 0.88 -0.8
2,061,785 - +0.2
2,061,888 + -0.8
2,061,928 - +0.2

Or see this region's nucleotide sequence