Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28985 and BPHYT_RS28990 are separated by 378 nucleotides BPHYT_RS28990 and BPHYT_RS28995 are separated by 43 nucleotides BPHYT_RS28995 and BPHYT_RS29000 overlap by 4 nucleotides BPHYT_RS29000 and BPHYT_RS29005 are separated by 21 nucleotides
BPHYT_RS28985: BPHYT_RS28985 - hypothetical protein, at 2,059,118 to 2,059,858
_RS28985
BPHYT_RS28990: BPHYT_RS28990 - hypothetical protein, at 2,060,237 to 2,060,503
_RS28990
BPHYT_RS28995: BPHYT_RS28995 - histidine kinase, at 2,060,547 to 2,061,902
_RS28995
BPHYT_RS29000: BPHYT_RS29000 - transcriptional regulator, at 2,061,899 to 2,062,612
_RS29000
BPHYT_RS29005: BPHYT_RS29005 - transporter, at 2,062,634 to 2,065,765
_RS29005
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-2
-1
0
1 at 2059.577 kb on + strand, within BPHYT_RS28985 at 2059.617 kb on - strand, within BPHYT_RS28985 at 2059.617 kb on - strand, within BPHYT_RS28985 at 2059.817 kb on + strand at 2059.997 kb on + strand at 2060.050 kb on + strand at 2060.050 kb on + strand at 2060.779 kb on + strand, within BPHYT_RS28995 at 2060.780 kb on - strand, within BPHYT_RS28995 at 2061.737 kb on - strand, within BPHYT_RS28995 at 2061.785 kb on - strand at 2061.888 kb on + strand at 2061.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 2,059,577 + BPHYT_RS28985 0.62 -0.3 2,059,617 - BPHYT_RS28985 0.67 +1.1 2,059,617 - BPHYT_RS28985 0.67 -1.8 2,059,817 + -0.4 2,059,997 + -0.3 2,060,050 + +0.1 2,060,050 + +0.5 2,060,779 + BPHYT_RS28995 0.17 -0.7 2,060,780 - BPHYT_RS28995 0.17 -1.7 2,061,737 - BPHYT_RS28995 0.88 -0.8 2,061,785 - +0.2 2,061,888 + -0.8 2,061,928 - +0.2
Or see this region's nucleotide sequence