Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28585 and BPHYT_RS28590 are separated by 212 nucleotides BPHYT_RS28590 and BPHYT_RS28595 are separated by 12 nucleotides BPHYT_RS28595 and BPHYT_RS28600 are separated by 23 nucleotides BPHYT_RS28600 and BPHYT_RS28605 are separated by 278 nucleotides
BPHYT_RS28585: BPHYT_RS28585 - NADP oxidoreductase, at 1,967,594 to 1,968,214
_RS28585
BPHYT_RS28590: BPHYT_RS28590 - ArsR family transcriptional regulator, at 1,968,427 to 1,968,750
_RS28590
BPHYT_RS28595: BPHYT_RS28595 - glyoxalase, at 1,968,763 to 1,969,239
_RS28595
BPHYT_RS28600: BPHYT_RS28600 - ArsC family transcriptional regulator, at 1,969,263 to 1,969,757
_RS28600
BPHYT_RS28605: BPHYT_RS28605 - NADPH-dependent FMN reductase, at 1,970,036 to 1,970,758
_RS28605
Position (kb)
1968
1969
1970 Strain fitness (log2 ratio)
-1
0
1
2 at 1967.995 kb on - strand, within BPHYT_RS28585 at 1968.306 kb on - strand at 1968.364 kb on + strand at 1968.477 kb on - strand, within BPHYT_RS28590 at 1968.810 kb on + strand at 1969.108 kb on - strand, within BPHYT_RS28595 at 1969.127 kb on + strand, within BPHYT_RS28595 at 1969.276 kb on + strand at 1969.277 kb on - strand at 1969.446 kb on - strand, within BPHYT_RS28600 at 1969.755 kb on + strand at 1970.023 kb on - strand at 1970.154 kb on - strand, within BPHYT_RS28605
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 1,967,995 - BPHYT_RS28585 0.65 +1.9 1,968,306 - +1.1 1,968,364 + -0.1 1,968,477 - BPHYT_RS28590 0.15 -1.4 1,968,810 + +1.9 1,969,108 - BPHYT_RS28595 0.72 -0.4 1,969,127 + BPHYT_RS28595 0.76 -1.5 1,969,276 + -0.2 1,969,277 - -0.4 1,969,446 - BPHYT_RS28600 0.37 -0.1 1,969,755 + +0.7 1,970,023 - -0.2 1,970,154 - BPHYT_RS28605 0.16 -0.1
Or see this region's nucleotide sequence