Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25070

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25065 and BPHYT_RS25070 overlap by 8 nucleotidesBPHYT_RS25070 and BPHYT_RS25075 are separated by 7 nucleotides BPHYT_RS25065: BPHYT_RS25065 - glycine/betaine ABC transporter ATPase, at 1,194,200 to 1,195,378 _RS25065 BPHYT_RS25070: BPHYT_RS25070 - choline ABC transporter permease, at 1,195,371 to 1,196,273 _RS25070 BPHYT_RS25075: BPHYT_RS25075 - AraC family transcriptional regulator, at 1,196,281 to 1,197,279 _RS25075 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -1 0 1at 1195.171 kb on - strand, within BPHYT_RS25065at 1195.310 kb on + strandat 1195.311 kb on - strandat 1195.608 kb on + strand, within BPHYT_RS25070at 1196.228 kb on + strandat 1196.423 kb on - strand, within BPHYT_RS25075at 1197.110 kb on - strand, within BPHYT_RS25075

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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1,195,171 - BPHYT_RS25065 0.82 +0.4
1,195,310 + -0.4
1,195,311 - +0.3
1,195,608 + BPHYT_RS25070 0.26 -0.8
1,196,228 + -0.6
1,196,423 - BPHYT_RS25075 0.14 +1.2
1,197,110 - BPHYT_RS25075 0.83 +0.2

Or see this region's nucleotide sequence