Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24190 and BPHYT_RS24195 are separated by 8 nucleotides BPHYT_RS24195 and BPHYT_RS24200 are separated by 51 nucleotides BPHYT_RS24200 and BPHYT_RS24205 are separated by 57 nucleotides BPHYT_RS24205 and BPHYT_RS24210 are separated by 91 nucleotides
BPHYT_RS24190: BPHYT_RS24190 - porin, at 995,409 to 996,608
_RS24190
BPHYT_RS24195: BPHYT_RS24195 - hypothetical protein, at 996,617 to 996,904
_RS24195
BPHYT_RS24200: BPHYT_RS24200 - 4-oxalocrotonate tautomerase, at 996,956 to 997,141
_RS24200
BPHYT_RS24205: BPHYT_RS24205 - aldolase, at 997,199 to 997,975
_RS24205
BPHYT_RS24210: BPHYT_RS24210 - urea transporter, at 998,067 to 999,011
_RS24210
Position (kb) 997
998 Strain fitness (log2 ratio) -1
0
1
2
3 at 996.237 kb on + strand, within BPHYT_RS24190 at 996.237 kb on + strand, within BPHYT_RS24190 at 996.343 kb on - strand, within BPHYT_RS24190 at 996.344 kb on + strand, within BPHYT_RS24190 at 996.344 kb on + strand at 996.349 kb on - strand, within BPHYT_RS24190 at 996.349 kb on - strand, within BPHYT_RS24190 at 996.417 kb on + strand, within BPHYT_RS24190 at 996.418 kb on - strand, within BPHYT_RS24190 at 996.421 kb on - strand, within BPHYT_RS24190 at 996.614 kb on + strand at 996.615 kb on - strand at 996.615 kb on - strand at 997.146 kb on + strand at 997.284 kb on + strand, within BPHYT_RS24205 at 997.284 kb on + strand, within BPHYT_RS24205 at 997.843 kb on - strand, within BPHYT_RS24205 at 998.068 kb on + strand at 998.069 kb on - strand at 998.169 kb on - strand, within BPHYT_RS24210 at 998.816 kb on - strand, within BPHYT_RS24210 at 998.816 kb on - strand, within BPHYT_RS24210
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 996,237 + BPHYT_RS24190 0.69 +0.5 996,237 + BPHYT_RS24190 0.69 -0.5 996,343 - BPHYT_RS24190 0.78 -0.1 996,344 + BPHYT_RS24190 0.78 -0.2 996,344 + +2.1 996,349 - BPHYT_RS24190 0.78 -0.9 996,349 - BPHYT_RS24190 0.78 -0.0 996,417 + BPHYT_RS24190 0.84 +0.7 996,418 - BPHYT_RS24190 0.84 +0.4 996,421 - BPHYT_RS24190 0.84 -1.0 996,614 + +0.0 996,615 - +0.0 996,615 - +0.9 997,146 + -1.1 997,284 + BPHYT_RS24205 0.11 +0.6 997,284 + BPHYT_RS24205 0.11 -0.0 997,843 - BPHYT_RS24205 0.83 +3.1 998,068 + -0.2 998,069 - -0.5 998,169 - BPHYT_RS24210 0.11 +0.3 998,816 - BPHYT_RS24210 0.79 +0.8 998,816 - BPHYT_RS24210 0.79 +0.3
Or see this region's nucleotide sequence