Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22355 and BPHYT_RS22360 are separated by 352 nucleotides BPHYT_RS22360 and BPHYT_RS22365 are separated by 24 nucleotides
BPHYT_RS22355: BPHYT_RS22355 - HAD family hydrolase, at 571,955 to 572,629
_RS22355
BPHYT_RS22360: BPHYT_RS22360 - response regulator receiver, at 572,982 to 573,944
_RS22360
BPHYT_RS22365: BPHYT_RS22365 - membrane protein, at 573,969 to 575,411
_RS22365
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 572.196 kb on - strand, within BPHYT_RS22355 at 572.382 kb on - strand, within BPHYT_RS22355 at 572.627 kb on + strand at 572.720 kb on + strand at 572.723 kb on + strand at 572.724 kb on - strand at 572.724 kb on - strand at 572.726 kb on - strand at 572.796 kb on - strand at 572.828 kb on + strand at 572.829 kb on - strand at 572.872 kb on + strand at 572.982 kb on - strand at 573.052 kb on - strand at 573.541 kb on - strand, within BPHYT_RS22360 at 573.541 kb on - strand, within BPHYT_RS22360 at 573.861 kb on + strand at 573.892 kb on + strand at 573.893 kb on - strand at 573.973 kb on - strand at 573.973 kb on - strand at 574.023 kb on + strand at 574.028 kb on - strand at 574.028 kb on - strand at 574.168 kb on - strand, within BPHYT_RS22365 at 574.200 kb on + strand, within BPHYT_RS22365 at 574.260 kb on + strand, within BPHYT_RS22365 at 574.286 kb on - strand, within BPHYT_RS22365 at 574.512 kb on + strand, within BPHYT_RS22365 at 574.524 kb on + strand, within BPHYT_RS22365 at 574.525 kb on - strand, within BPHYT_RS22365 at 574.753 kb on - strand, within BPHYT_RS22365
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 572,196 - BPHYT_RS22355 0.36 -1.5 572,382 - BPHYT_RS22355 0.63 +0.5 572,627 + +0.4 572,720 + -1.1 572,723 + -0.0 572,724 - -0.9 572,724 - -0.3 572,726 - -1.8 572,796 - -2.0 572,828 + +0.3 572,829 - -0.9 572,872 + +0.1 572,982 - -0.1 573,052 - +0.7 573,541 - BPHYT_RS22360 0.58 -1.0 573,541 - BPHYT_RS22360 0.58 -1.2 573,861 + -0.2 573,892 + -0.4 573,893 - -0.9 573,973 - -1.7 573,973 - -0.9 574,023 + +0.4 574,028 - -0.4 574,028 - -0.7 574,168 - BPHYT_RS22365 0.14 +0.1 574,200 + BPHYT_RS22365 0.16 +1.5 574,260 + BPHYT_RS22365 0.20 -0.7 574,286 - BPHYT_RS22365 0.22 +0.5 574,512 + BPHYT_RS22365 0.38 +1.1 574,524 + BPHYT_RS22365 0.38 -0.2 574,525 - BPHYT_RS22365 0.39 -3.5 574,753 - BPHYT_RS22365 0.54 +0.1
Or see this region's nucleotide sequence