Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20970

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20960 and BPHYT_RS20965 are separated by 232 nucleotidesBPHYT_RS20965 and BPHYT_RS20970 are separated by 70 nucleotidesBPHYT_RS20970 and BPHYT_RS20975 are separated by 138 nucleotides BPHYT_RS20960: BPHYT_RS20960 - dihydrofolate reductase, at 262,759 to 263,721 _RS20960 BPHYT_RS20965: BPHYT_RS20965 - photosystem reaction center subunit H, at 263,954 to 264,427 _RS20965 BPHYT_RS20970: BPHYT_RS20970 - hypothetical protein, at 264,498 to 264,728 _RS20970 BPHYT_RS20975: BPHYT_RS20975 - haloacid dehalogenase, at 264,867 to 265,595 _RS20975 Position (kb) 264 265Strain fitness (log2 ratio) -1 0 1 2at 263.578 kb on - strand, within BPHYT_RS20960at 263.943 kb on - strandat 263.946 kb on - strandat 264.031 kb on - strand, within BPHYT_RS20965at 264.452 kb on - strandat 264.659 kb on + strand, within BPHYT_RS20970at 264.855 kb on + strandat 265.096 kb on + strand, within BPHYT_RS20975at 265.096 kb on + strand, within BPHYT_RS20975at 265.417 kb on - strand, within BPHYT_RS20975at 265.696 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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263,578 - BPHYT_RS20960 0.85 +0.1
263,943 - -0.1
263,946 - -1.5
264,031 - BPHYT_RS20965 0.16 +0.3
264,452 - -0.4
264,659 + BPHYT_RS20970 0.70 -1.5
264,855 + +2.3
265,096 + BPHYT_RS20975 0.31 -0.3
265,096 + BPHYT_RS20975 0.31 -0.0
265,417 - BPHYT_RS20975 0.75 -0.3
265,696 + -0.1

Or see this region's nucleotide sequence