Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20715

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20705 and BPHYT_RS20710 are separated by 2 nucleotidesBPHYT_RS20710 and BPHYT_RS20715 are separated by 2 nucleotidesBPHYT_RS20715 and BPHYT_RS20720 are separated by 419 nucleotidesBPHYT_RS20720 and BPHYT_RS20725 are separated by 18 nucleotides BPHYT_RS20705: BPHYT_RS20705 - Chase2 sensor protein, at 206,098 to 207,810 _RS20705 BPHYT_RS20710: BPHYT_RS20710 - hypothetical protein, at 207,813 to 208,193 _RS20710 BPHYT_RS20715: BPHYT_RS20715 - peptidase, at 208,196 to 209,902 _RS20715 BPHYT_RS20720: BPHYT_RS20720 - hypothetical protein, at 210,322 to 210,588 _RS20720 BPHYT_RS20725: BPHYT_RS20725 - histidine kinase, at 210,607 to 211,944 _RS20725 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.731 kb on + strandat 207.933 kb on + strand, within BPHYT_RS20710at 207.934 kb on - strand, within BPHYT_RS20710at 207.966 kb on + strand, within BPHYT_RS20710at 208.242 kb on + strandat 209.370 kb on - strand, within BPHYT_RS20715at 209.531 kb on - strand, within BPHYT_RS20715at 210.439 kb on + strand, within BPHYT_RS20720at 210.440 kb on - strand, within BPHYT_RS20720at 210.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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207,731 + +0.9
207,933 + BPHYT_RS20710 0.31 +0.7
207,934 - BPHYT_RS20710 0.32 -0.1
207,966 + BPHYT_RS20710 0.40 -1.4
208,242 + -1.8
209,370 - BPHYT_RS20715 0.69 -1.1
209,531 - BPHYT_RS20715 0.78 -1.3
210,439 + BPHYT_RS20720 0.44 +0.4
210,440 - BPHYT_RS20720 0.44 -0.3
210,574 + +2.4

Or see this region's nucleotide sequence