Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16510
Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.032 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,742,505 | - | BPHYT_RS16505 | 0.63 | +0.3 | |
| 3,742,505 | - | BPHYT_RS16505 | 0.63 | +1.1 | |
| 3,742,645 | + | BPHYT_RS16505 | 0.83 | -0.1 | |
| 3,742,692 | + | -0.3 | |||
| 3,742,693 | - | -0.1 | |||
| 3,742,693 | - | -0.5 | |||
| 3,742,756 | + | +0.9 | |||
| 3,742,848 | + | -0.1 | |||
| 3,742,914 | + | +0.5 | |||
| 3,743,161 | - | BPHYT_RS16510 | 0.22 | -0.1 | |
| 3,743,867 | - | +0.2 | |||
| 3,743,867 | - | -0.4 | |||
| 3,743,867 | - | +0.2 | |||
| 3,743,867 | - | +0.4 | |||
| 3,743,963 | + | -0.2 | |||
| 3,744,015 | + | -0.9 | |||
| 3,744,085 | + | +0.3 | |||
| 3,744,085 | + | -0.5 | |||
| 3,744,086 | - | +0.5 | |||
| 3,744,086 | - | -0.1 | |||
| 3,744,086 | - | -0.1 | |||
| 3,744,118 | + | -0.6 | |||
| 3,744,296 | + | BPHYT_RS16515 | 0.18 | -0.3 | |
| 3,744,515 | - | BPHYT_RS16515 | 0.49 | +1.3 |
Or see this region's nucleotide sequence