Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16430

Experiment: Paraquat dichloride 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.032 mg/ml
3,724,107	-		BPHYT_RS16420	0.77	+0.4
3,724,107	-		BPHYT_RS16420	0.77	-1.4
3,724,153	+		BPHYT_RS16420	0.82	+0.9
3,724,685	+				-0.3
3,724,690	-				-0.3
3,724,700	-				-0.0
3,724,787	-				-0.9
3,724,834	-				+0.5
3,724,834	-				-0.7
3,724,893	+				-0.1
3,724,894	-				-1.6
3,724,958	-				-1.7
3,724,969	+				-1.8
3,724,969	+				-1.5
3,724,992	+				-2.2
3,724,992	+				-1.5
3,724,993	-				-0.2
3,724,993	-				+0.2
3,725,075	+				+0.2
3,725,076	-				+0.3
3,725,076	-				+0.6
3,725,143	+		BPHYT_RS16430	0.10	-0.0
3,725,144	-		BPHYT_RS16430	0.10	+0.3
3,725,144	-		BPHYT_RS16430	0.10	-0.6
3,725,144	-		BPHYT_RS16430	0.10	+0.4
3,725,145	+		BPHYT_RS16430	0.11	+0.5
3,725,146	-		BPHYT_RS16430	0.11	-3.7
3,725,184	+		BPHYT_RS16430	0.16	-0.2
3,725,212	-		BPHYT_RS16430	0.20	+2.6
3,725,254	+		BPHYT_RS16430	0.25	-0.4
3,725,254	+		BPHYT_RS16430	0.25	-0.1
3,725,254	+		BPHYT_RS16430	0.25	+0.2
3,725,254	+		BPHYT_RS16430	0.25	+0.4
3,725,254	+		BPHYT_RS16430	0.25	+0.2
3,725,255	-		BPHYT_RS16430	0.26	+0.6
3,725,255	-		BPHYT_RS16430	0.26	+0.4
3,725,255	-		BPHYT_RS16430	0.26	+0.4
3,725,287	+		BPHYT_RS16430	0.30	+0.3
3,725,288	-		BPHYT_RS16430	0.30	+0.4
3,725,293	+		BPHYT_RS16430	0.31	+0.7
3,725,293	+		BPHYT_RS16430	0.31	+1.5
3,725,294	-		BPHYT_RS16430	0.31	+0.0
3,725,294	-		BPHYT_RS16430	0.31	+2.1
3,725,294	-		BPHYT_RS16430	0.31	+0.7
3,725,294	-		BPHYT_RS16430	0.31	+1.4
3,725,294	-		BPHYT_RS16430	0.31	+0.2
3,725,294	-		BPHYT_RS16430	0.31	+0.1
3,725,347	+		BPHYT_RS16430	0.38	-3.5
3,725,348	-		BPHYT_RS16430	0.38	+0.6
3,725,359	+		BPHYT_RS16430	0.40	-0.5
3,725,359	+		BPHYT_RS16430	0.40	+1.8
3,725,359	+		BPHYT_RS16430	0.40	+0.1
3,725,359	+		BPHYT_RS16430	0.40	+0.2
3,725,360	-		BPHYT_RS16430	0.40	+0.5
3,725,360	-		BPHYT_RS16430	0.40	+0.5
3,725,374	+		BPHYT_RS16430	0.42	+1.1
3,725,374	+		BPHYT_RS16430	0.42	+0.0
3,725,374	+		BPHYT_RS16430	0.42	+0.4
3,725,375	-		BPHYT_RS16430	0.42	+0.8
3,725,375	-		BPHYT_RS16430	0.42	+0.6
3,725,375	-		BPHYT_RS16430	0.42	+1.0
3,725,395	+		BPHYT_RS16430	0.45	+0.4
3,725,395	+				-0.7
3,725,395	+		BPHYT_RS16430	0.45	+0.8
3,725,395	+		BPHYT_RS16430	0.45	+0.9
3,725,396	-		BPHYT_RS16430	0.45	+0.4
3,725,396	-		BPHYT_RS16430	0.45	-0.2
3,725,396	-				+0.3
3,725,548	-		BPHYT_RS16430	0.66	+0.2
3,725,590	+		BPHYT_RS16430	0.71	-0.2
3,725,590	+		BPHYT_RS16430	0.71	-0.0
3,725,591	-		BPHYT_RS16430	0.71	+0.5
3,725,591	-		BPHYT_RS16430	0.71	+0.7
3,725,797	+				+0.3
3,725,798	-				+0.4
3,725,912	+				+0.4
3,725,912	+				+0.4
3,725,912	+				+0.5
3,725,912	+				+0.9
3,725,913	-				-0.4
3,725,913	-				+0.9
3,725,913	-				+0.5
3,725,913	-				+0.5
3,725,913	-				+1.3
3,725,913	-				-0.3
3,725,913	-				+1.6
3,725,913	-				+1.2
3,725,913	-				+0.3
3,725,913	-				+0.3
3,725,913	-				+0.5
3,725,913	-				+0.9
3,725,916	+				+0.3
3,725,916	+				+0.9
3,725,916	+				+0.4
3,725,917	-				-0.8
3,726,001	-		BPHYT_RS16435	0.14	+1.1
3,726,107	-		BPHYT_RS16435	0.22	+0.6
3,726,139	+		BPHYT_RS16435	0.24	-0.4
3,726,184	+		BPHYT_RS16435	0.28	-0.3
3,726,208	+		BPHYT_RS16435	0.30	+1.0
3,726,208	+		BPHYT_RS16435	0.30	+0.4
3,726,208	+		BPHYT_RS16435	0.30	+0.0
3,726,209	-		BPHYT_RS16435	0.30	+0.7
3,726,209	-		BPHYT_RS16435	0.30	-0.0
3,726,244	+		BPHYT_RS16435	0.33	+0.8
3,726,244	+		BPHYT_RS16435	0.33	-0.6
3,726,244	+		BPHYT_RS16435	0.33	-1.0
3,726,244	+		BPHYT_RS16435	0.33	+0.9
3,726,244	+		BPHYT_RS16435	0.33	+0.5
3,726,250	+		BPHYT_RS16435	0.33	-0.1
3,726,250	+		BPHYT_RS16435	0.33	-0.1
3,726,251	-		BPHYT_RS16435	0.33	+0.2
3,726,251	-		BPHYT_RS16435	0.33	-0.0
3,726,367	+		BPHYT_RS16435	0.42	-0.3
3,726,367	+		BPHYT_RS16435	0.42	+0.7
3,726,526	+		BPHYT_RS16435	0.54	+0.4
3,726,670	+		BPHYT_RS16435	0.65	-1.0
3,726,670	+		BPHYT_RS16435	0.65	+1.4
3,726,670	+		BPHYT_RS16435	0.65	+0.3
3,726,670	+		BPHYT_RS16435	0.65	+0.1
3,726,670	+		BPHYT_RS16435	0.65	+1.7
3,726,670	+		BPHYT_RS16435	0.65	-1.6
3,726,671	-		BPHYT_RS16435	0.65	+0.1
3,726,671	-		BPHYT_RS16435	0.65	-0.3
3,726,671	-		BPHYT_RS16435	0.65	+1.4
3,726,706	+		BPHYT_RS16435	0.68	-0.1
3,726,706	+		BPHYT_RS16435	0.68	-0.0
3,726,707	-				+1.9