Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16290

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16285 and BPHYT_RS16290 are separated by 62 nucleotidesBPHYT_RS16290 and BPHYT_RS16295 are separated by 169 nucleotides BPHYT_RS16285: BPHYT_RS16285 - Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data), at 3,697,139 to 3,698,062 _RS16285 BPHYT_RS16290: BPHYT_RS16290 - hypothetical protein, at 3,698,125 to 3,698,319 _RS16290 BPHYT_RS16295: BPHYT_RS16295 - ADP-heptose--LPS heptosyltransferase, at 3,698,489 to 3,699,514 _RS16295 Position (kb) 3698 3699Strain fitness (log2 ratio) -2 -1 0 1at 3697.138 kb on + strandat 3697.138 kb on + strandat 3697.430 kb on + strand, within BPHYT_RS16285at 3697.430 kb on + strand, within BPHYT_RS16285at 3697.431 kb on - strand, within BPHYT_RS16285at 3697.529 kb on + strand, within BPHYT_RS16285at 3697.529 kb on + strand, within BPHYT_RS16285at 3697.880 kb on + strand, within BPHYT_RS16285at 3697.880 kb on + strand, within BPHYT_RS16285at 3698.108 kb on + strandat 3698.108 kb on + strandat 3698.281 kb on + strandat 3698.281 kb on + strand, within BPHYT_RS16290at 3698.387 kb on + strandat 3698.416 kb on + strandat 3698.444 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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3,697,138 + -0.2
3,697,138 + -0.1
3,697,430 + BPHYT_RS16285 0.31 +1.2
3,697,430 + BPHYT_RS16285 0.31 +1.6
3,697,431 - BPHYT_RS16285 0.32 +1.6
3,697,529 + BPHYT_RS16285 0.42 -0.4
3,697,529 + BPHYT_RS16285 0.42 +0.1
3,697,880 + BPHYT_RS16285 0.80 +0.9
3,697,880 + BPHYT_RS16285 0.80 -0.2
3,698,108 + -0.4
3,698,108 + +0.2
3,698,281 + +0.5
3,698,281 + BPHYT_RS16290 0.80 -1.8
3,698,387 + -0.5
3,698,416 + -0.5
3,698,444 + +0.5

Or see this region's nucleotide sequence