Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07350

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07340 and BPHYT_RS07345 are separated by 12 nucleotidesBPHYT_RS07345 and BPHYT_RS07350 overlap by 1 nucleotidesBPHYT_RS07350 and BPHYT_RS07355 are separated by 86 nucleotides BPHYT_RS07340: BPHYT_RS07340 - glyoxalase, at 1,664,632 to 1,665,237 _RS07340 BPHYT_RS07345: BPHYT_RS07345 - nitrate ABC transporter permease, at 1,665,250 to 1,665,993 _RS07345 BPHYT_RS07350: BPHYT_RS07350 - ABC transporter ATP-binding protein, at 1,665,993 to 1,666,844 _RS07350 BPHYT_RS07355: BPHYT_RS07355 - hypothetical protein, at 1,666,931 to 1,667,803 _RS07355 Position (kb) 1665 1666 1667Strain fitness (log2 ratio) -1 0 1at 1665.969 kb on - strandat 1666.664 kb on + strand, within BPHYT_RS07350at 1666.665 kb on - strand, within BPHYT_RS07350at 1666.923 kb on + strandat 1666.923 kb on + strandat 1666.984 kb on + strandat 1666.985 kb on - strandat 1666.986 kb on + strandat 1667.016 kb on + strandat 1667.174 kb on + strand, within BPHYT_RS07355at 1667.274 kb on + strand, within BPHYT_RS07355at 1667.274 kb on + strand, within BPHYT_RS07355at 1667.356 kb on + strand, within BPHYT_RS07355at 1667.359 kb on - strand, within BPHYT_RS07355at 1667.359 kb on - strand, within BPHYT_RS07355at 1667.359 kb on - strand, within BPHYT_RS07355at 1667.371 kb on - strand, within BPHYT_RS07355at 1667.429 kb on - strand, within BPHYT_RS07355at 1667.430 kb on + strandat 1667.602 kb on - strand, within BPHYT_RS07355at 1667.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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1,665,969 - -0.5
1,666,664 + BPHYT_RS07350 0.79 -0.8
1,666,665 - BPHYT_RS07350 0.79 -0.7
1,666,923 + +0.0
1,666,923 + +0.1
1,666,984 + +0.4
1,666,985 - +1.1
1,666,986 + -1.6
1,667,016 + +0.1
1,667,174 + BPHYT_RS07355 0.28 +0.4
1,667,274 + BPHYT_RS07355 0.39 +1.1
1,667,274 + BPHYT_RS07355 0.39 -0.2
1,667,356 + BPHYT_RS07355 0.49 +0.0
1,667,359 - BPHYT_RS07355 0.49 -0.1
1,667,359 - BPHYT_RS07355 0.49 +0.6
1,667,359 - BPHYT_RS07355 0.49 +0.8
1,667,371 - BPHYT_RS07355 0.50 -0.3
1,667,429 - BPHYT_RS07355 0.57 +0.0
1,667,430 + +0.8
1,667,602 - BPHYT_RS07355 0.77 -0.6
1,667,806 - +0.7

Or see this region's nucleotide sequence