Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07340 and BPHYT_RS07345 are separated by 12 nucleotides BPHYT_RS07345 and BPHYT_RS07350 overlap by 1 nucleotides BPHYT_RS07350 and BPHYT_RS07355 are separated by 86 nucleotides
BPHYT_RS07340: BPHYT_RS07340 - glyoxalase, at 1,664,632 to 1,665,237
_RS07340
BPHYT_RS07345: BPHYT_RS07345 - nitrate ABC transporter permease, at 1,665,250 to 1,665,993
_RS07345
BPHYT_RS07350: BPHYT_RS07350 - ABC transporter ATP-binding protein, at 1,665,993 to 1,666,844
_RS07350
BPHYT_RS07355: BPHYT_RS07355 - hypothetical protein, at 1,666,931 to 1,667,803
_RS07355
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-1
0
1 at 1665.969 kb on - strand at 1666.664 kb on + strand, within BPHYT_RS07350 at 1666.665 kb on - strand, within BPHYT_RS07350 at 1666.923 kb on + strand at 1666.923 kb on + strand at 1666.984 kb on + strand at 1666.985 kb on - strand at 1666.986 kb on + strand at 1667.016 kb on + strand at 1667.174 kb on + strand, within BPHYT_RS07355 at 1667.274 kb on + strand, within BPHYT_RS07355 at 1667.274 kb on + strand, within BPHYT_RS07355 at 1667.356 kb on + strand, within BPHYT_RS07355 at 1667.359 kb on - strand, within BPHYT_RS07355 at 1667.359 kb on - strand, within BPHYT_RS07355 at 1667.359 kb on - strand, within BPHYT_RS07355 at 1667.371 kb on - strand, within BPHYT_RS07355 at 1667.429 kb on - strand, within BPHYT_RS07355 at 1667.430 kb on + strand at 1667.602 kb on - strand, within BPHYT_RS07355 at 1667.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 1,665,969 - -0.5 1,666,664 + BPHYT_RS07350 0.79 -0.8 1,666,665 - BPHYT_RS07350 0.79 -0.7 1,666,923 + +0.0 1,666,923 + +0.1 1,666,984 + +0.4 1,666,985 - +1.1 1,666,986 + -1.6 1,667,016 + +0.1 1,667,174 + BPHYT_RS07355 0.28 +0.4 1,667,274 + BPHYT_RS07355 0.39 +1.1 1,667,274 + BPHYT_RS07355 0.39 -0.2 1,667,356 + BPHYT_RS07355 0.49 +0.0 1,667,359 - BPHYT_RS07355 0.49 -0.1 1,667,359 - BPHYT_RS07355 0.49 +0.6 1,667,359 - BPHYT_RS07355 0.49 +0.8 1,667,371 - BPHYT_RS07355 0.50 -0.3 1,667,429 - BPHYT_RS07355 0.57 +0.0 1,667,430 + +0.8 1,667,602 - BPHYT_RS07355 0.77 -0.6 1,667,806 - +0.7
Or see this region's nucleotide sequence