Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04885 and BPHYT_RS04890 are separated by 17 nucleotides BPHYT_RS04890 and BPHYT_RS04895 overlap by 1 nucleotides BPHYT_RS04895 and BPHYT_RS04900 are separated by 293 nucleotides
BPHYT_RS04885: BPHYT_RS04885 - threonine-phosphate decarboxylase, at 1,123,905 to 1,124,954
_RS04885
BPHYT_RS04890: BPHYT_RS04890 - cobalamin biosynthesis protein CobD, at 1,124,972 to 1,125,907
_RS04890
BPHYT_RS04895: BPHYT_RS04895 - adenosylcobinamide kinase, at 1,125,907 to 1,126,461
_RS04895
BPHYT_RS04900: BPHYT_RS04900 - cobyric acid synthase, at 1,126,755 to 1,128,215
_RS04900
Position (kb) 1124
1125
1126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1124.620 kb on + strand, within BPHYT_RS04885 at 1124.624 kb on + strand, within BPHYT_RS04885 at 1124.831 kb on + strand, within BPHYT_RS04885 at 1125.038 kb on - strand at 1125.268 kb on - strand, within BPHYT_RS04890 at 1125.268 kb on - strand, within BPHYT_RS04890 at 1126.017 kb on - strand, within BPHYT_RS04895 at 1126.252 kb on + strand, within BPHYT_RS04895 at 1126.361 kb on + strand, within BPHYT_RS04895 at 1126.361 kb on + strand, within BPHYT_RS04895 at 1126.361 kb on + strand, within BPHYT_RS04895 at 1126.436 kb on - strand at 1126.473 kb on - strand at 1126.732 kb on + strand at 1126.738 kb on + strand at 1126.738 kb on + strand at 1126.784 kb on + strand at 1126.785 kb on - strand at 1126.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 1,124,620 + BPHYT_RS04885 0.68 -0.1 1,124,624 + BPHYT_RS04885 0.68 +0.9 1,124,831 + BPHYT_RS04885 0.88 -1.8 1,125,038 - -0.9 1,125,268 - BPHYT_RS04890 0.32 -1.7 1,125,268 - BPHYT_RS04890 0.32 -0.8 1,126,017 - BPHYT_RS04895 0.20 -3.2 1,126,252 + BPHYT_RS04895 0.62 -0.9 1,126,361 + BPHYT_RS04895 0.82 -0.5 1,126,361 + BPHYT_RS04895 0.82 -0.2 1,126,361 + BPHYT_RS04895 0.82 -0.8 1,126,436 - -0.9 1,126,473 - +2.3 1,126,732 + -0.6 1,126,738 + -0.3 1,126,738 + -0.7 1,126,784 + -0.4 1,126,785 - -1.5 1,126,785 - -0.1
Or see this region's nucleotide sequence