Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04155

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04155 and BPHYT_RS04160 are separated by 514 nucleotides BPHYT_RS04155: BPHYT_RS04155 - polysaccharide deacetylase, at 953,531 to 954,415 _RS04155 BPHYT_RS04160: BPHYT_RS04160 - glycosyl transferase family 1, at 954,930 to 956,150 _RS04160 Position (kb) 953 954 955Strain fitness (log2 ratio) -2 -1 0 1 2at 952.742 kb on + strandat 952.789 kb on + strandat 952.830 kb on - strandat 953.136 kb on + strandat 953.137 kb on - strandat 953.482 kb on + strandat 953.482 kb on + strandat 953.765 kb on - strand, within BPHYT_RS04155at 953.806 kb on + strand, within BPHYT_RS04155at 953.806 kb on + strand, within BPHYT_RS04155at 954.902 kb on - strandat 954.949 kb on + strandat 955.166 kb on + strand, within BPHYT_RS04160at 955.167 kb on - strand, within BPHYT_RS04160at 955.243 kb on - strand, within BPHYT_RS04160at 955.310 kb on - strand, within BPHYT_RS04160at 955.407 kb on + strand, within BPHYT_RS04160

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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952,742 + -0.1
952,789 + +1.9
952,830 - -0.1
953,136 + -0.8
953,137 - +0.0
953,482 + -0.1
953,482 + +0.0
953,765 - BPHYT_RS04155 0.26 +0.7
953,806 + BPHYT_RS04155 0.31 +0.4
953,806 + BPHYT_RS04155 0.31 -0.5
954,902 - +1.3
954,949 + -0.6
955,166 + BPHYT_RS04160 0.19 -1.1
955,167 - BPHYT_RS04160 0.19 +0.5
955,243 - BPHYT_RS04160 0.26 -1.2
955,310 - BPHYT_RS04160 0.31 -2.1
955,407 + BPHYT_RS04160 0.39 +0.1

Or see this region's nucleotide sequence