Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04145

Experiment: Paraquat dichloride 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS04140 and BPHYT_RS04145 are separated by 117 nucleotidesBPHYT_RS04145 and BPHYT_RS04150 overlap by 4 nucleotides BPHYT_RS04140: BPHYT_RS04140 - polysaccharide biosynthesis protein, at 948,609 to 949,868 _RS04140 BPHYT_RS04145: BPHYT_RS04145 - family 2 glycosyl transferase, at 949,986 to 950,957 _RS04145 BPHYT_RS04150: BPHYT_RS04150 - UDP-galactopyranose mutase, at 950,954 to 952,045 _RS04150 Position (kb) 949 950 951Strain fitness (log2 ratio) -1 0 1at 949.174 kb on + strand, within BPHYT_RS04140at 949.287 kb on + strand, within BPHYT_RS04140at 949.682 kb on + strand, within BPHYT_RS04140at 949.946 kb on + strandat 949.947 kb on - strandat 950.026 kb on - strandat 950.182 kb on - strand, within BPHYT_RS04145at 950.228 kb on + strand, within BPHYT_RS04145at 950.228 kb on + strand, within BPHYT_RS04145at 950.310 kb on - strand, within BPHYT_RS04145at 950.310 kb on - strand, within BPHYT_RS04145at 950.372 kb on - strand, within BPHYT_RS04145at 950.465 kb on + strand, within BPHYT_RS04145at 950.466 kb on - strand, within BPHYT_RS04145at 950.687 kb on - strand, within BPHYT_RS04145at 950.832 kb on - strand, within BPHYT_RS04145at 950.838 kb on - strand, within BPHYT_RS04145at 951.013 kb on - strandat 951.121 kb on - strand, within BPHYT_RS04150at 951.217 kb on - strand, within BPHYT_RS04150at 951.357 kb on + strand, within BPHYT_RS04150at 951.694 kb on - strand, within BPHYT_RS04150at 951.838 kb on - strand, within BPHYT_RS04150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
remove
949,174 + BPHYT_RS04140 0.45 -0.6
949,287 + BPHYT_RS04140 0.54 -1.1
949,682 + BPHYT_RS04140 0.85 -1.4
949,946 + +0.2
949,947 - +0.7
950,026 - -0.3
950,182 - BPHYT_RS04145 0.20 +0.3
950,228 + BPHYT_RS04145 0.25 -1.6
950,228 + BPHYT_RS04145 0.25 -0.9
950,310 - BPHYT_RS04145 0.33 -0.2
950,310 - BPHYT_RS04145 0.33 -0.3
950,372 - BPHYT_RS04145 0.40 -0.6
950,465 + BPHYT_RS04145 0.49 -1.1
950,466 - BPHYT_RS04145 0.49 -0.4
950,687 - BPHYT_RS04145 0.72 -0.2
950,832 - BPHYT_RS04145 0.87 -0.1
950,838 - BPHYT_RS04145 0.88 -1.1
951,013 - -0.5
951,121 - BPHYT_RS04150 0.15 +0.5
951,217 - BPHYT_RS04150 0.24 -0.0
951,357 + BPHYT_RS04150 0.37 +0.8
951,694 - BPHYT_RS04150 0.68 -0.2
951,838 - BPHYT_RS04150 0.81 +0.1

Or see this region's nucleotide sequence