Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03915 and BPHYT_RS03920 are separated by 27 nucleotides BPHYT_RS03920 and BPHYT_RS03925 are separated by 306 nucleotides BPHYT_RS03925 and BPHYT_RS03930 are separated by 234 nucleotides
BPHYT_RS03915: BPHYT_RS03915 - hypothetical protein, at 886,214 to 886,465
_RS03915
BPHYT_RS03920: BPHYT_RS03920 - lysine transporter LysE, at 886,493 to 887,134
_RS03920
BPHYT_RS03925: BPHYT_RS03925 - LysR family transcriptional regulator, at 887,441 to 888,334
_RS03925
BPHYT_RS03930: BPHYT_RS03930 - 3-hydroxy-3-methylglutaryl-CoA lyase, at 888,569 to 889,546
_RS03930
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 886.774 kb on - strand, within BPHYT_RS03920 at 886.878 kb on + strand, within BPHYT_RS03920 at 886.879 kb on - strand, within BPHYT_RS03920 at 886.921 kb on - strand, within BPHYT_RS03920 at 887.139 kb on - strand at 887.498 kb on - strand at 887.498 kb on - strand at 887.702 kb on + strand, within BPHYT_RS03925 at 888.099 kb on - strand, within BPHYT_RS03925 at 888.107 kb on + strand, within BPHYT_RS03925 at 888.108 kb on - strand, within BPHYT_RS03925 at 888.206 kb on + strand, within BPHYT_RS03925 at 888.561 kb on - strand at 888.786 kb on - strand, within BPHYT_RS03930 at 888.896 kb on - strand, within BPHYT_RS03930 at 888.970 kb on + strand, within BPHYT_RS03930
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 886,774 - BPHYT_RS03920 0.44 +0.4 886,878 + BPHYT_RS03920 0.60 +0.2 886,879 - BPHYT_RS03920 0.60 +0.3 886,921 - BPHYT_RS03920 0.67 -0.1 887,139 - -2.1 887,498 - -0.8 887,498 - +0.1 887,702 + BPHYT_RS03925 0.29 -1.6 888,099 - BPHYT_RS03925 0.74 -1.8 888,107 + BPHYT_RS03925 0.74 -1.4 888,108 - BPHYT_RS03925 0.75 -0.2 888,206 + BPHYT_RS03925 0.86 -0.1 888,561 - -0.1 888,786 - BPHYT_RS03930 0.22 -0.1 888,896 - BPHYT_RS03930 0.33 -0.0 888,970 + BPHYT_RS03930 0.41 -0.4
Or see this region's nucleotide sequence