Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03815

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03810 and BPHYT_RS03815 are separated by 331 nucleotidesBPHYT_RS03815 and BPHYT_RS03820 are separated by 73 nucleotides BPHYT_RS03810: BPHYT_RS03810 - transposase, at 860,086 to 861,363 _RS03810 BPHYT_RS03815: BPHYT_RS03815 - MFS transporter permease, at 861,695 to 862,855 _RS03815 BPHYT_RS03820: BPHYT_RS03820 - major facilitator superfamily protein, at 862,929 to 864,095 _RS03820 Position (kb) 861 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 861.764 kb on + strandat 861.765 kb on - strandat 861.931 kb on + strand, within BPHYT_RS03815at 861.931 kb on + strand, within BPHYT_RS03815at 861.933 kb on + strand, within BPHYT_RS03815at 861.963 kb on + strand, within BPHYT_RS03815at 861.963 kb on + strand, within BPHYT_RS03815at 861.964 kb on - strand, within BPHYT_RS03815at 861.964 kb on - strand, within BPHYT_RS03815at 861.965 kb on + strand, within BPHYT_RS03815at 862.049 kb on - strand, within BPHYT_RS03815at 862.257 kb on - strand, within BPHYT_RS03815at 862.868 kb on + strandat 862.868 kb on + strandat 862.868 kb on + strandat 862.869 kb on - strandat 862.869 kb on - strandat 862.871 kb on + strandat 863.434 kb on + strand, within BPHYT_RS03820at 863.435 kb on - strand, within BPHYT_RS03820at 863.435 kb on - strand, within BPHYT_RS03820at 863.435 kb on - strand, within BPHYT_RS03820at 863.435 kb on - strand, within BPHYT_RS03820

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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861,764 + -2.3
861,765 - -3.1
861,931 + BPHYT_RS03815 0.20 -3.0
861,931 + BPHYT_RS03815 0.20 -2.4
861,933 + BPHYT_RS03815 0.20 -1.8
861,963 + BPHYT_RS03815 0.23 -1.6
861,963 + BPHYT_RS03815 0.23 -2.4
861,964 - BPHYT_RS03815 0.23 -3.9
861,964 - BPHYT_RS03815 0.23 +0.1
861,965 + BPHYT_RS03815 0.23 -1.6
862,049 - BPHYT_RS03815 0.30 -4.3
862,257 - BPHYT_RS03815 0.48 -1.3
862,868 + -2.3
862,868 + +0.3
862,868 + +0.7
862,869 - +4.0
862,869 - +4.5
862,871 + -3.8
863,434 + BPHYT_RS03820 0.43 +0.7
863,435 - BPHYT_RS03820 0.43 +0.1
863,435 - BPHYT_RS03820 0.43 +0.1
863,435 - BPHYT_RS03820 0.43 +0.3
863,435 - BPHYT_RS03820 0.43 +1.8

Or see this region's nucleotide sequence