Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12025

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
2,725,823	+		AO356_12020	0.53	-2.3
2,725,824	-		AO356_12020	0.53	-2.7
2,725,824	-		AO356_12020	0.53	-1.9
2,725,913	+		AO356_12020	0.60	-4.2
2,725,913	+		AO356_12020	0.60	-1.3
2,725,913	+		AO356_12020	0.60	-2.1
2,725,913	+		AO356_12020	0.60	-3.7
2,725,913	+		AO356_12020	0.60	-2.0
2,725,913	+		AO356_12020	0.60	-1.8
2,725,913	+		AO356_12020	0.60	-1.0
2,725,913	+		AO356_12020	0.60	-2.2
2,725,913	+		AO356_12020	0.60	-1.3
2,725,913	+		AO356_12020	0.60	-3.3
2,725,913	+		AO356_12020	0.60	-2.3
2,725,914	-		AO356_12020	0.60	-2.3
2,725,914	-		AO356_12020	0.60	-0.2
2,725,914	-		AO356_12020	0.60	-1.3
2,725,914	-		AO356_12020	0.60	-2.2
2,725,914	-		AO356_12020	0.60	-2.2
2,725,914	-		AO356_12020	0.60	-3.1
2,725,914	-		AO356_12020	0.60	+1.8
2,725,914	-		AO356_12020	0.60	-0.7
2,726,133	-		AO356_12020	0.75	-1.7
2,726,135	+		AO356_12020	0.75	-2.2
2,726,135	+		AO356_12020	0.75	-2.2
2,726,135	+		AO356_12020	0.75	-2.2
2,726,135	+		AO356_12020	0.75	-2.5
2,726,135	+		AO356_12020	0.75	-2.5
2,726,135	+		AO356_12020	0.75	-2.2
2,726,135	+		AO356_12020	0.75	-2.0
2,726,136	-		AO356_12020	0.75	-2.5
2,726,136	-		AO356_12020	0.75	-0.2
2,726,136	-		AO356_12020	0.75	-1.5
2,726,136	-		AO356_12020	0.75	-1.6
2,726,136	-		AO356_12020	0.75	-2.1
2,726,136	-		AO356_12020	0.75	-2.2
2,726,136	-		AO356_12020	0.75	-3.0
2,726,177	+		AO356_12020	0.78	-4.5
2,726,177	+		AO356_12020	0.78	-0.7
2,726,178	-		AO356_12020	0.78	-2.9
2,726,186	+		AO356_12020	0.79	-0.7
2,726,187	-		AO356_12020	0.79	-3.7
2,726,187	-		AO356_12020	0.79	-3.7
2,726,204	+		AO356_12020	0.80	-2.2
2,726,205	-		AO356_12020	0.80	-1.9
2,726,205	-		AO356_12020	0.80	-1.4
2,726,205	-		AO356_12020	0.80	-2.8
2,726,321	+		AO356_12020	0.89	-2.5
2,726,321	+		AO356_12020	0.89	-3.2
2,726,321	+		AO356_12020	0.89	-1.9
2,726,321	+		AO356_12020	0.89	-1.7
2,726,322	-		AO356_12020	0.89	-2.4
2,726,322	-		AO356_12020	0.89	-2.5
2,726,324	+		AO356_12020	0.89	-2.1
2,726,324	+		AO356_12020	0.89	-2.5
2,726,325	-		AO356_12020	0.89	-1.5
2,726,325	-		AO356_12020	0.89	-0.8
2,726,371	+				-3.0
2,726,371	+				-2.9
2,726,372	-				-1.9
2,726,372	-				-1.6
2,726,409	-				-3.8
2,726,409	-				-2.6
2,726,489	+				-3.0
2,726,489	+				-2.8
2,726,489	+				-1.7
2,726,489	+				-3.6
2,726,489	+				-2.6
2,726,490	-				-1.7
2,726,490	-				-3.0
2,726,490	-				-2.8
2,726,490	-				-2.2
2,726,490	-				-2.3
2,726,490	-				-2.1
2,726,490	-				-2.5
2,726,490	-				-2.5
2,726,490	-				-2.6
2,726,775	+		AO356_12025	0.15	-0.6
2,726,775	+		AO356_12025	0.15	-0.5
2,726,775	+		AO356_12025	0.15	-2.4
2,726,776	-		AO356_12025	0.15	-1.5
2,726,840	+		AO356_12025	0.19	-3.2
2,726,932	-		AO356_12025	0.24	-2.7
2,727,046	-		AO356_12025	0.30	-2.0
2,727,046	-		AO356_12025	0.30	-2.0
2,727,246	-		AO356_12025	0.41	-2.7
2,727,303	+		AO356_12025	0.45	-2.5
2,727,303	+		AO356_12025	0.45	-3.4
2,727,303	+		AO356_12025	0.45	-3.4
2,727,303	+		AO356_12025	0.45	-0.9
2,727,303	+		AO356_12025	0.45	-1.6
2,727,303	+		AO356_12025	0.45	-2.7
2,727,304	-		AO356_12025	0.45	-3.4
2,727,304	-		AO356_12025	0.45	-3.2
2,727,304	-		AO356_12025	0.45	-3.4
2,727,304	-		AO356_12025	0.45	-2.7
2,727,304	-		AO356_12025	0.45	-3.1
2,727,304	-		AO356_12025	0.45	-2.8
2,727,304	-		AO356_12025	0.45	-2.5
2,727,304	-		AO356_12025	0.45	-1.8
2,727,304	-		AO356_12025	0.45	-3.5
2,727,309	+		AO356_12025	0.45	-1.2
2,727,310	-		AO356_12025	0.45	-2.2
2,727,310	-		AO356_12025	0.45	-1.6
2,727,327	+		AO356_12025	0.46	-2.4
2,727,327	+		AO356_12025	0.46	-1.7
2,727,327	+		AO356_12025	0.46	-2.6
2,727,327	+		AO356_12025	0.46	-1.9
2,727,327	+		AO356_12025	0.46	-2.7
2,727,328	-		AO356_12025	0.46	-3.2
2,727,328	-		AO356_12025	0.46	-2.4
2,727,328	-		AO356_12025	0.46	-2.0
2,727,328	-		AO356_12025	0.46	-0.7
2,727,328	-		AO356_12025	0.46	-2.3
2,727,328	-		AO356_12025	0.46	-2.1
2,727,570	+		AO356_12025	0.59	-1.7
2,727,570	+		AO356_12025	0.59	-2.4
2,727,570	+		AO356_12025	0.59	+0.3
2,727,570	+		AO356_12025	0.59	-3.2
2,727,570	+		AO356_12025	0.59	-2.2
2,727,571	-		AO356_12025	0.59	-1.3
2,727,571	-		AO356_12025	0.59	-2.0
2,727,571	-		AO356_12025	0.59	-2.7
2,727,571	-		AO356_12025	0.59	-2.9
2,727,600	+		AO356_12025	0.61	+0.3
2,727,601	-		AO356_12025	0.61	-3.0
2,727,601	-		AO356_12025	0.61	-1.2
2,727,601	-		AO356_12025	0.61	-1.5
2,727,601	-		AO356_12025	0.61	-2.4
2,727,601	-		AO356_12025	0.61	-0.2
2,727,777	+		AO356_12025	0.71	-1.9
2,727,777	+		AO356_12025	0.71	-0.2
2,727,777	+		AO356_12025	0.71	-3.6
2,727,778	-		AO356_12025	0.71	-1.9
2,727,778	-		AO356_12025	0.71	-3.1
2,727,778	-		AO356_12025	0.71	-1.7
2,727,778	-		AO356_12025	0.71	-2.3
2,727,778	-		AO356_12025	0.71	-4.3
2,727,778	-		AO356_12025	0.71	-2.2
2,727,778	-		AO356_12025	0.71	-2.9
2,727,940	-		AO356_12025	0.80	-3.3
2,727,940	-		AO356_12025	0.80	-2.4
2,727,940	-		AO356_12025	0.80	-2.4
2,727,993	+		AO356_12025	0.83	-0.3
2,727,994	-		AO356_12025	0.83	+0.0
2,727,994	-		AO356_12025	0.83	-1.5
2,727,994	-		AO356_12025	0.83	-2.3
2,727,994	-		AO356_12025	0.83	-1.1
2,727,994	-		AO356_12025	0.83	-2.6
2,727,994	-		AO356_12025	0.83	-3.4
2,727,994	-		AO356_12025	0.83	-2.0
2,727,994	-		AO356_12025	0.83	-0.2
2,728,319	+				+0.3
2,728,319	+				-0.1
2,728,320	-				-2.9
2,728,320	-				-0.0
2,728,320	-				-3.1
2,728,320	-				-2.1
2,728,329	+				-0.9
2,728,329	+				-0.6
2,728,518	+				+0.4
2,728,518	+				-1.2
2,728,518	+				-0.7
2,728,519	-				+0.4
2,728,519	-				-0.7
2,728,519	-				-0.7
2,728,519	-				-1.4
2,728,519	-				-1.6
2,728,519	-				+0.2
2,728,519	-				+0.4
2,728,519	-				-0.5
2,728,612	+				+0.1
2,728,613	-				-0.8
2,728,614	+				+0.8
2,728,614	+				-0.3
2,728,614	+				+0.3
2,728,614	+				+0.9
2,728,614	+				+0.1
2,728,614	+				+0.1
2,728,614	+				+1.0
2,728,614	+				+0.3
2,728,614	+				+0.4
2,728,615	-				-2.2
2,728,615	-				-1.5
2,728,615	-				+0.3
2,728,615	-				-2.5
2,728,668	+		AO356_12030	0.10	-0.2
2,728,668	+		AO356_12030	0.10	-0.2
2,728,669	-		AO356_12030	0.10	+0.1
2,728,669	-		AO356_12030	0.10	+0.7
2,728,669	-		AO356_12030	0.10	-1.8
2,728,764	+		AO356_12030	0.15	+0.3
2,728,764	+		AO356_12030	0.15	-0.7
2,728,765	-		AO356_12030	0.15	-0.6
2,728,765	-		AO356_12030	0.15	-0.0
2,728,765	-		AO356_12030	0.15	+0.0
2,728,765	-		AO356_12030	0.15	-0.9
2,728,837	-		AO356_12030	0.18	-0.6
2,728,860	+		AO356_12030	0.19	-0.1
2,728,860	+		AO356_12030	0.19	-0.3
2,728,860	+		AO356_12030	0.19	+0.9
2,728,860	+		AO356_12030	0.19	-0.3
2,728,860	+		AO356_12030	0.19	+0.2
2,728,861	-		AO356_12030	0.19	+0.8
2,728,861	-		AO356_12030	0.19	+0.8
2,728,861	-		AO356_12030	0.19	-0.5
2,728,896	+		AO356_12030	0.21	+0.1
2,728,897	-		AO356_12030	0.21	+0.3
2,729,007	+		AO356_12030	0.26	-2.0
2,729,008	-		AO356_12030	0.26	-0.2
2,729,008	-		AO356_12030	0.26	+1.0
2,729,008	-		AO356_12030	0.26	-0.0
2,729,025	-		AO356_12030	0.27	+0.3
2,729,056	-		AO356_12030	0.29	-0.2
2,729,056	-		AO356_12030	0.29	+0.6
2,729,224	+		AO356_12030	0.36	+0.1
2,729,224	+		AO356_12030	0.36	+0.3
2,729,224	+		AO356_12030	0.36	-0.3
2,729,224	+		AO356_12030	0.36	+0.8
2,729,225	-		AO356_12030	0.36	+0.1
2,729,225	-		AO356_12030	0.36	+0.5
2,729,225	-		AO356_12030	0.36	+0.8