Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04320

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04315 and AO356_04320 are separated by 34 nucleotidesAO356_04320 and AO356_04325 are separated by 104 nucleotides AO356_04315: AO356_04315 - AAA family ATPase, at 983,052 to 983,897 _04315 AO356_04320: AO356_04320 - hypothetical protein, at 983,932 to 985,110 _04320 AO356_04325: AO356_04325 - allophanate hydrolase, at 985,215 to 986,135 _04325 Position (kb) 983 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 982.943 kb on + strandat 982.944 kb on - strandat 982.944 kb on - strandat 982.981 kb on - strandat 982.982 kb on + strandat 982.982 kb on + strandat 982.983 kb on - strandat 982.983 kb on - strandat 982.983 kb on - strandat 982.996 kb on - strandat 982.996 kb on - strandat 982.996 kb on - strandat 982.996 kb on - strandat 982.996 kb on - strandat 982.999 kb on + strandat 982.999 kb on + strandat 982.999 kb on + strandat 982.999 kb on + strandat 982.999 kb on + strandat 983.000 kb on - strandat 983.000 kb on - strandat 983.000 kb on - strandat 983.076 kb on + strandat 983.076 kb on + strandat 983.076 kb on + strandat 983.077 kb on - strandat 983.077 kb on - strandat 983.259 kb on + strand, within AO356_04315at 983.260 kb on - strand, within AO356_04315at 983.266 kb on - strand, within AO356_04315at 983.332 kb on - strand, within AO356_04315at 983.332 kb on - strand, within AO356_04315at 983.332 kb on - strand, within AO356_04315at 983.332 kb on - strand, within AO356_04315at 983.463 kb on + strand, within AO356_04315at 983.463 kb on + strand, within AO356_04315at 983.463 kb on + strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.464 kb on - strand, within AO356_04315at 983.469 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.519 kb on + strand, within AO356_04315at 983.520 kb on - strand, within AO356_04315at 983.520 kb on - strand, within AO356_04315at 983.520 kb on - strand, within AO356_04315at 983.577 kb on + strand, within AO356_04315at 983.577 kb on + strand, within AO356_04315at 983.577 kb on + strand, within AO356_04315at 983.577 kb on + strand, within AO356_04315at 983.578 kb on - strand, within AO356_04315at 983.578 kb on - strand, within AO356_04315at 983.578 kb on - strand, within AO356_04315at 983.578 kb on - strand, within AO356_04315at 983.972 kb on + strandat 983.973 kb on - strandat 984.052 kb on + strand, within AO356_04320at 984.052 kb on + strand, within AO356_04320at 984.052 kb on + strand, within AO356_04320at 984.052 kb on + strand, within AO356_04320at 984.052 kb on + strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.053 kb on - strand, within AO356_04320at 984.055 kb on + strand, within AO356_04320at 984.055 kb on + strand, within AO356_04320at 984.055 kb on + strand, within AO356_04320at 984.055 kb on + strand, within AO356_04320at 984.056 kb on - strand, within AO356_04320at 984.056 kb on - strand, within AO356_04320at 984.056 kb on - strand, within AO356_04320at 984.124 kb on + strand, within AO356_04320at 984.125 kb on - strand, within AO356_04320at 984.442 kb on + strand, within AO356_04320at 984.443 kb on - strand, within AO356_04320at 984.510 kb on + strand, within AO356_04320at 984.510 kb on + strand, within AO356_04320at 984.511 kb on - strand, within AO356_04320at 984.730 kb on + strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.754 kb on + strand, within AO356_04320at 984.754 kb on + strand, within AO356_04320at 984.754 kb on + strand, within AO356_04320at 984.826 kb on + strand, within AO356_04320at 984.826 kb on + strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.838 kb on + strand, within AO356_04320at 984.839 kb on - strand, within AO356_04320at 984.877 kb on + strand, within AO356_04320at 984.878 kb on - strand, within AO356_04320at 984.932 kb on - strand, within AO356_04320at 984.932 kb on - strand, within AO356_04320at 984.961 kb on + strand, within AO356_04320at 984.961 kb on + strand, within AO356_04320at 984.961 kb on + strand, within AO356_04320at 984.962 kb on - strand, within AO356_04320at 984.962 kb on - strand, within AO356_04320at 984.962 kb on - strand, within AO356_04320at 984.989 kb on - strand, within AO356_04320at 985.011 kb on + strandat 985.011 kb on + strandat 985.011 kb on + strandat 985.058 kb on - strandat 985.058 kb on - strandat 985.058 kb on - strandat 985.108 kb on + strandat 985.108 kb on + strandat 985.174 kb on + strandat 985.174 kb on + strandat 985.174 kb on + strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.439 kb on + strand, within AO356_04325at 985.440 kb on - strand, within AO356_04325at 985.440 kb on - strand, within AO356_04325at 985.468 kb on + strand, within AO356_04325at 985.670 kb on - strand, within AO356_04325at 985.795 kb on + strand, within AO356_04325at 985.887 kb on + strand, within AO356_04325at 985.888 kb on - strand, within AO356_04325at 985.949 kb on + strand, within AO356_04325

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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982,943 + +1.2
982,944 - +0.2
982,944 - -0.7
982,981 - +0.3
982,982 + +0.4
982,982 + -0.1
982,983 - -0.1
982,983 - -0.8
982,983 - -0.8
982,996 - +1.0
982,996 - -0.8
982,996 - +0.1
982,996 - +0.8
982,996 - +0.2
982,999 + -0.5
982,999 + +0.6
982,999 + -0.3
982,999 + +0.4
982,999 + +1.0
983,000 - -0.1
983,000 - -0.3
983,000 - +0.9
983,076 + -0.1
983,076 + -0.2
983,076 + +0.1
983,077 - -1.0
983,077 - +0.3
983,259 + AO356_04315 0.24 +0.3
983,260 - AO356_04315 0.25 +0.5
983,266 - AO356_04315 0.25 +1.4
983,332 - AO356_04315 0.33 +0.3
983,332 - AO356_04315 0.33 -0.0
983,332 - AO356_04315 0.33 -0.1
983,332 - AO356_04315 0.33 +0.0
983,463 + AO356_04315 0.49 +0.7
983,463 + AO356_04315 0.49 -1.1
983,463 + AO356_04315 0.49 -0.0
983,464 - AO356_04315 0.49 -0.6
983,464 - AO356_04315 0.49 -1.3
983,464 - AO356_04315 0.49 +0.2
983,464 - AO356_04315 0.49 +0.9
983,464 - AO356_04315 0.49 -0.8
983,464 - AO356_04315 0.49 +0.1
983,464 - AO356_04315 0.49 +0.4
983,464 - AO356_04315 0.49 -0.5
983,469 + AO356_04315 0.49 -0.3
983,519 + AO356_04315 0.55 -1.5
983,519 + AO356_04315 0.55 +0.3
983,519 + AO356_04315 0.55 -1.6
983,519 + AO356_04315 0.55 -0.9
983,519 + AO356_04315 0.55 -0.5
983,519 + AO356_04315 0.55 +0.8
983,519 + AO356_04315 0.55 +0.5
983,520 - AO356_04315 0.55 -0.2
983,520 - AO356_04315 0.55 -0.9
983,520 - AO356_04315 0.55 +0.1
983,577 + AO356_04315 0.62 +0.0
983,577 + AO356_04315 0.62 +0.4
983,577 + AO356_04315 0.62 +0.2
983,577 + AO356_04315 0.62 -0.5
983,578 - AO356_04315 0.62 -0.3
983,578 - AO356_04315 0.62 -0.2
983,578 - AO356_04315 0.62 +0.6
983,578 - AO356_04315 0.62 -0.2
983,972 + +0.5
983,973 - -0.4
984,052 + AO356_04320 0.10 +0.3
984,052 + AO356_04320 0.10 +0.8
984,052 + AO356_04320 0.10 +0.0
984,052 + AO356_04320 0.10 -0.3
984,052 + AO356_04320 0.10 +0.2
984,053 - AO356_04320 0.10 +0.7
984,053 - AO356_04320 0.10 -1.4
984,053 - AO356_04320 0.10 +0.1
984,053 - AO356_04320 0.10 +0.2
984,053 - AO356_04320 0.10 -0.2
984,053 - AO356_04320 0.10 +0.9
984,053 - AO356_04320 0.10 -0.7
984,053 - AO356_04320 0.10 +0.4
984,053 - AO356_04320 0.10 +0.5
984,053 - AO356_04320 0.10 +0.6
984,055 + AO356_04320 0.10 +0.7
984,055 + AO356_04320 0.10 +0.3
984,055 + AO356_04320 0.10 +0.7
984,055 + AO356_04320 0.10 -0.5
984,056 - AO356_04320 0.11 +0.3
984,056 - AO356_04320 0.11 +1.7
984,056 - AO356_04320 0.11 +1.9
984,124 + AO356_04320 0.16 +0.0
984,125 - AO356_04320 0.16 +0.3
984,442 + AO356_04320 0.43 +0.6
984,443 - AO356_04320 0.43 +1.0
984,510 + AO356_04320 0.49 -0.0
984,510 + AO356_04320 0.49 -0.5
984,511 - AO356_04320 0.49 +0.6
984,730 + AO356_04320 0.68 -0.6
984,731 - AO356_04320 0.68 +0.2
984,731 - AO356_04320 0.68 -0.3
984,731 - AO356_04320 0.68 +0.2
984,731 - AO356_04320 0.68 +0.0
984,736 + AO356_04320 0.68 +0.2
984,736 + AO356_04320 0.68 +0.1
984,736 + AO356_04320 0.68 -1.5
984,736 + AO356_04320 0.68 -0.8
984,736 + AO356_04320 0.68 +0.5
984,736 + AO356_04320 0.68 +0.4
984,737 - AO356_04320 0.68 +0.3
984,737 - AO356_04320 0.68 +0.7
984,737 - AO356_04320 0.68 -0.2
984,737 - AO356_04320 0.68 -0.7
984,737 - AO356_04320 0.68 -0.4
984,737 - AO356_04320 0.68 -0.1
984,737 - AO356_04320 0.68 -1.2
984,737 - AO356_04320 0.68 +0.2
984,737 - AO356_04320 0.68 +0.1
984,754 + AO356_04320 0.70 +0.4
984,754 + AO356_04320 0.70 -1.3
984,754 + AO356_04320 0.70 -0.7
984,826 + AO356_04320 0.76 -1.0
984,826 + AO356_04320 0.76 -0.3
984,827 - AO356_04320 0.76 +0.2
984,827 - AO356_04320 0.76 +0.3
984,827 - AO356_04320 0.76 -1.6
984,827 - AO356_04320 0.76 -0.1
984,827 - AO356_04320 0.76 +0.4
984,838 + AO356_04320 0.77 +0.3
984,839 - AO356_04320 0.77 -0.2
984,877 + AO356_04320 0.80 -0.4
984,878 - AO356_04320 0.80 +0.6
984,932 - AO356_04320 0.85 -0.3
984,932 - AO356_04320 0.85 +0.1
984,961 + AO356_04320 0.87 +0.5
984,961 + AO356_04320 0.87 -0.6
984,961 + AO356_04320 0.87 -1.0
984,962 - AO356_04320 0.87 +0.8
984,962 - AO356_04320 0.87 -0.6
984,962 - AO356_04320 0.87 -0.6
984,989 - AO356_04320 0.90 -0.5
985,011 + -1.4
985,011 + +0.1
985,011 + +0.3
985,058 - -0.0
985,058 - +0.2
985,058 - +0.0
985,108 + -0.3
985,108 + -0.8
985,174 + +0.5
985,174 + +0.2
985,174 + +0.7
985,175 - +0.4
985,175 - +1.2
985,175 - -0.8
985,175 - -0.2
985,175 - -0.8
985,175 - +0.1
985,175 - +1.1
985,175 - -0.6
985,175 - +0.2
985,178 + -1.0
985,178 + -0.3
985,178 + -0.5
985,178 + +0.8
985,179 - +1.7
985,179 - +0.1
985,179 - -0.1
985,179 - -0.1
985,179 - +0.2
985,179 - +0.9
985,179 - +0.2
985,439 + AO356_04325 0.24 -0.8
985,440 - AO356_04325 0.24 -0.2
985,440 - AO356_04325 0.24 -1.8
985,468 + AO356_04325 0.27 -1.8
985,670 - AO356_04325 0.49 +0.4
985,795 + AO356_04325 0.63 -1.6
985,887 + AO356_04325 0.73 -0.5
985,888 - AO356_04325 0.73 -3.3
985,949 + AO356_04325 0.80 -1.3

Or see this region's nucleotide sequence