Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01745 and AO356_01750 are separated by 107 nucleotides AO356_01750 and AO356_01755 are separated by 93 nucleotides
AO356_01745: AO356_01745 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 394,376 to 395,659
_01745
AO356_01750: AO356_01750 - ATP-dependent Clp protease proteolytic subunit, at 395,767 to 396,408
_01750
AO356_01755: AO356_01755 - trigger factor, at 396,502 to 397,812
_01755
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.836 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 395.109 kb on + strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.192 kb on + strand, within AO356_01745 at 395.192 kb on + strand, within AO356_01745 at 395.193 kb on - strand, within AO356_01745 at 395.193 kb on - strand, within AO356_01745 at 395.197 kb on - strand, within AO356_01745 at 395.370 kb on + strand, within AO356_01745 at 395.371 kb on - strand, within AO356_01745 at 395.428 kb on - strand, within AO356_01745 at 395.616 kb on + strand at 395.617 kb on - strand at 395.617 kb on - strand at 395.768 kb on + strand at 395.768 kb on + strand at 395.769 kb on - strand at 396.129 kb on - strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.245 kb on + strand, within AO356_01750 at 396.246 kb on - strand, within AO356_01750 at 396.246 kb on - strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.300 kb on - strand, within AO356_01750 at 396.429 kb on + strand at 396.430 kb on - strand at 396.433 kb on + strand at 396.433 kb on + strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.445 kb on - strand at 396.450 kb on + strand at 396.450 kb on + strand at 396.483 kb on - strand at 396.483 kb on - strand at 396.483 kb on - strand at 396.571 kb on - strand at 396.589 kb on - strand at 396.651 kb on - strand, within AO356_01755 at 396.651 kb on - strand, within AO356_01755 at 397.152 kb on - strand, within AO356_01755
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 394,836 - AO356_01745 0.36 -0.2 394,836 - AO356_01745 0.36 -0.6 394,836 - AO356_01745 0.36 -0.6 395,109 + AO356_01745 0.57 -2.2 395,110 - AO356_01745 0.57 -1.6 395,110 - AO356_01745 0.57 -1.2 395,110 - AO356_01745 0.57 -1.6 395,192 + AO356_01745 0.64 -0.9 395,192 + AO356_01745 0.64 -0.9 395,193 - AO356_01745 0.64 -1.2 395,193 - AO356_01745 0.64 -0.9 395,197 - AO356_01745 0.64 -2.2 395,370 + AO356_01745 0.77 -0.6 395,371 - AO356_01745 0.77 -2.3 395,428 - AO356_01745 0.82 -1.9 395,616 + -0.7 395,617 - -2.0 395,617 - -0.6 395,768 + -1.9 395,768 + -2.0 395,769 - -0.2 396,129 - AO356_01750 0.56 -1.2 396,173 + AO356_01750 0.63 -1.6 396,173 + AO356_01750 0.63 -0.6 396,173 + AO356_01750 0.63 -1.2 396,245 + AO356_01750 0.74 -1.6 396,246 - AO356_01750 0.75 +0.4 396,246 - AO356_01750 0.75 -1.4 396,299 + AO356_01750 0.83 -0.2 396,299 + AO356_01750 0.83 -1.6 396,299 + AO356_01750 0.83 -2.0 396,300 - AO356_01750 0.83 +0.4 396,429 + -0.6 396,430 - -1.5 396,433 + -0.2 396,433 + -1.7 396,434 - -0.4 396,434 - -1.4 396,434 - -2.1 396,434 - -0.0 396,445 - -1.3 396,450 + -1.4 396,450 + -0.2 396,483 - -2.0 396,483 - -0.5 396,483 - +1.1 396,571 - +0.7 396,589 - -0.0 396,651 - AO356_01755 0.11 -0.9 396,651 - AO356_01755 0.11 -0.2 397,152 - AO356_01755 0.50 +2.4
Or see this region's nucleotide sequence