Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004420 and ABIE53_004421 are separated by 155 nucleotides ABIE53_004421 and ABIE53_004422 are separated by 43 nucleotides ABIE53_004422 and ABIE53_004423 are separated by 185 nucleotides ABIE53_004423 and ABIE53_004424 overlap by 14 nucleotides
ABIE53_004420: ABIE53_004420 - hypothetical protein, at 608,359 to 609,699
_004420
ABIE53_004421: ABIE53_004421 - methylated-DNA-[protein]-cysteine S-methyltransferase, at 609,855 to 610,457
_004421
ABIE53_004422: ABIE53_004422 - hypothetical protein, at 610,501 to 612,084
_004422
ABIE53_004423: ABIE53_004423 - uncharacterized protein YecT (DUF1311 family), at 612,270 to 612,719
_004423
ABIE53_004424: ABIE53_004424 - lysozyme, at 612,706 to 613,269
_004424
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 609.705 kb on + strand at 609.740 kb on + strand at 609.822 kb on + strand at 609.822 kb on + strand at 609.822 kb on + strand at 609.823 kb on - strand at 609.861 kb on + strand at 609.861 kb on + strand at 609.861 kb on + strand at 609.861 kb on + strand at 609.862 kb on - strand at 609.862 kb on - strand at 609.862 kb on - strand at 609.867 kb on + strand at 609.867 kb on + strand at 609.867 kb on + strand at 609.867 kb on + strand at 610.035 kb on + strand, within ABIE53_004421 at 610.035 kb on + strand, within ABIE53_004421 at 610.035 kb on + strand, within ABIE53_004421 at 610.036 kb on - strand, within ABIE53_004421 at 610.036 kb on - strand, within ABIE53_004421 at 610.036 kb on - strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.146 kb on - strand, within ABIE53_004421 at 610.146 kb on - strand, within ABIE53_004421 at 610.146 kb on - strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.255 kb on + strand, within ABIE53_004421 at 610.255 kb on + strand, within ABIE53_004421 at 610.255 kb on + strand, within ABIE53_004421 at 610.313 kb on - strand, within ABIE53_004421 at 610.313 kb on - strand, within ABIE53_004421 at 610.386 kb on - strand, within ABIE53_004421 at 610.486 kb on + strand at 610.487 kb on - strand at 610.487 kb on - strand at 610.487 kb on - strand at 610.565 kb on + strand at 610.565 kb on + strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.751 kb on + strand, within ABIE53_004422 at 610.752 kb on - strand, within ABIE53_004422 at 610.781 kb on + strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.782 kb on - strand, within ABIE53_004422 at 610.813 kb on + strand, within ABIE53_004422 at 610.813 kb on + strand, within ABIE53_004422 at 610.813 kb on + strand, within ABIE53_004422 at 610.813 kb on + strand, within ABIE53_004422 at 610.813 kb on + strand, within ABIE53_004422 at 610.813 kb on + strand, within ABIE53_004422 at 610.814 kb on - strand, within ABIE53_004422 at 610.814 kb on - strand, within ABIE53_004422 at 610.851 kb on + strand, within ABIE53_004422 at 610.852 kb on - strand, within ABIE53_004422 at 610.852 kb on - strand, within ABIE53_004422 at 610.970 kb on + strand, within ABIE53_004422 at 610.971 kb on - strand, within ABIE53_004422 at 611.015 kb on - strand, within ABIE53_004422 at 611.015 kb on - strand, within ABIE53_004422 at 611.187 kb on - strand, within ABIE53_004422 at 611.187 kb on - strand, within ABIE53_004422 at 611.229 kb on + strand, within ABIE53_004422 at 611.230 kb on - strand, within ABIE53_004422 at 611.230 kb on - strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.231 kb on + strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.232 kb on - strand, within ABIE53_004422 at 611.316 kb on + strand, within ABIE53_004422 at 611.518 kb on - strand, within ABIE53_004422 at 611.546 kb on + strand, within ABIE53_004422 at 611.546 kb on + strand, within ABIE53_004422 at 611.546 kb on + strand, within ABIE53_004422 at 611.547 kb on - strand, within ABIE53_004422 at 611.547 kb on - strand, within ABIE53_004422 at 611.547 kb on - strand, within ABIE53_004422 at 611.555 kb on + strand, within ABIE53_004422 at 611.555 kb on + strand, within ABIE53_004422 at 611.585 kb on + strand, within ABIE53_004422 at 611.585 kb on + strand, within ABIE53_004422 at 611.585 kb on + strand, within ABIE53_004422 at 611.585 kb on + strand, within ABIE53_004422 at 611.586 kb on - strand, within ABIE53_004422 at 611.586 kb on - strand, within ABIE53_004422 at 611.586 kb on - strand, within ABIE53_004422 at 611.606 kb on + strand, within ABIE53_004422 at 611.606 kb on + strand, within ABIE53_004422 at 611.606 kb on + strand, within ABIE53_004422 at 611.607 kb on - strand, within ABIE53_004422 at 611.621 kb on + strand, within ABIE53_004422 at 611.621 kb on + strand, within ABIE53_004422 at 611.621 kb on + strand, within ABIE53_004422 at 611.621 kb on + strand, within ABIE53_004422 at 611.622 kb on - strand, within ABIE53_004422 at 611.622 kb on - strand, within ABIE53_004422 at 611.696 kb on + strand, within ABIE53_004422 at 611.696 kb on + strand, within ABIE53_004422 at 611.696 kb on + strand, within ABIE53_004422 at 611.696 kb on + strand, within ABIE53_004422 at 611.697 kb on - strand, within ABIE53_004422 at 611.697 kb on - strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.726 kb on + strand, within ABIE53_004422 at 611.727 kb on - strand, within ABIE53_004422 at 611.840 kb on + strand, within ABIE53_004422 at 611.841 kb on - strand, within ABIE53_004422 at 611.841 kb on - strand, within ABIE53_004422 at 611.841 kb on - strand, within ABIE53_004422 at 612.039 kb on + strand at 612.039 kb on + strand at 612.039 kb on + strand at 612.039 kb on + strand at 612.039 kb on + strand at 612.039 kb on + strand at 612.040 kb on - strand at 612.040 kb on - strand at 612.040 kb on - strand at 612.040 kb on - strand at 612.040 kb on - strand at 612.040 kb on - strand at 612.125 kb on + strand at 612.125 kb on + strand at 612.125 kb on + strand at 612.125 kb on + strand at 612.125 kb on + strand at 612.125 kb on + strand at 612.126 kb on - strand at 612.126 kb on - strand at 612.126 kb on - strand at 612.152 kb on + strand at 612.168 kb on + strand at 612.169 kb on - strand at 612.200 kb on - strand at 612.202 kb on + strand at 612.202 kb on + strand at 612.202 kb on + strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.271 kb on + strand at 612.271 kb on + strand at 612.272 kb on - strand at 612.272 kb on - strand at 612.272 kb on - strand at 612.358 kb on + strand, within ABIE53_004423 at 612.359 kb on - strand, within ABIE53_004423 at 612.501 kb on - strand, within ABIE53_004423 at 612.501 kb on - strand, within ABIE53_004423 at 612.502 kb on + strand, within ABIE53_004423 at 612.509 kb on + strand, within ABIE53_004423 at 612.509 kb on + strand, within ABIE53_004423 at 612.510 kb on - strand, within ABIE53_004423 at 612.513 kb on + strand, within ABIE53_004423 at 612.513 kb on + strand, within ABIE53_004423 at 612.536 kb on + strand, within ABIE53_004423 at 612.550 kb on - strand, within ABIE53_004423 at 612.550 kb on - strand, within ABIE53_004423 at 612.550 kb on - strand, within ABIE53_004423 at 612.683 kb on + strand at 612.684 kb on - strand at 612.684 kb on - strand at 612.708 kb on - strand at 612.708 kb on - strand at 612.708 kb on - strand at 612.708 kb on - strand at 612.708 kb on - strand at 612.720 kb on + strand at 612.721 kb on - strand at 612.803 kb on + strand, within ABIE53_004424 at 612.803 kb on + strand, within ABIE53_004424 at 612.803 kb on + strand, within ABIE53_004424 at 612.803 kb on + strand, within ABIE53_004424 at 612.804 kb on - strand, within ABIE53_004424 at 612.804 kb on - strand, within ABIE53_004424 at 612.804 kb on - strand, within ABIE53_004424 at 612.833 kb on + strand, within ABIE53_004424 at 612.834 kb on - strand, within ABIE53_004424 at 612.834 kb on - strand, within ABIE53_004424 at 612.834 kb on - strand, within ABIE53_004424 at 612.848 kb on - strand, within ABIE53_004424 at 612.871 kb on - strand, within ABIE53_004424 at 612.911 kb on + strand, within ABIE53_004424 at 613.012 kb on - strand, within ABIE53_004424 at 613.012 kb on - strand, within ABIE53_004424
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 609,705 + -0.6 609,740 + -1.0 609,822 + -0.6 609,822 + -0.1 609,822 + +0.3 609,823 - +0.9 609,861 + -1.0 609,861 + -1.3 609,861 + +0.2 609,861 + -0.2 609,862 - -0.8 609,862 - -0.4 609,862 - +0.1 609,867 + +1.5 609,867 + -0.6 609,867 + -0.4 609,867 + -2.1 610,035 + ABIE53_004421 0.30 -1.0 610,035 + ABIE53_004421 0.30 +1.0 610,035 + ABIE53_004421 0.30 -0.9 610,036 - ABIE53_004421 0.30 -0.8 610,036 - ABIE53_004421 0.30 -2.6 610,036 - ABIE53_004421 0.30 -0.3 610,145 + ABIE53_004421 0.48 +1.2 610,145 + ABIE53_004421 0.48 +0.5 610,145 + ABIE53_004421 0.48 -0.8 610,145 + ABIE53_004421 0.48 +1.2 610,145 + ABIE53_004421 0.48 +0.2 610,145 + ABIE53_004421 0.48 +0.4 610,145 + ABIE53_004421 0.48 -0.0 610,145 + ABIE53_004421 0.48 +0.8 610,146 - ABIE53_004421 0.48 -0.1 610,146 - ABIE53_004421 0.48 -1.7 610,146 - ABIE53_004421 0.48 +0.2 610,149 + ABIE53_004421 0.49 -1.4 610,149 + ABIE53_004421 0.49 -1.3 610,149 + ABIE53_004421 0.49 -0.7 610,149 + ABIE53_004421 0.49 +1.2 610,150 - ABIE53_004421 0.49 +3.2 610,150 - ABIE53_004421 0.49 +1.7 610,150 - ABIE53_004421 0.49 -0.1 610,150 - ABIE53_004421 0.49 +3.8 610,255 + ABIE53_004421 0.66 -0.8 610,255 + ABIE53_004421 0.66 -0.1 610,255 + ABIE53_004421 0.66 +2.2 610,313 - ABIE53_004421 0.76 -0.6 610,313 - ABIE53_004421 0.76 +2.9 610,386 - ABIE53_004421 0.88 -0.5 610,486 + -1.1 610,487 - -1.5 610,487 - +0.2 610,487 - -1.4 610,565 + +2.3 610,565 + -0.9 610,566 - -0.8 610,566 - -0.8 610,566 - +1.2 610,566 - +0.6 610,566 - -1.7 610,751 + ABIE53_004422 0.16 +0.4 610,752 - ABIE53_004422 0.16 +3.8 610,781 + ABIE53_004422 0.18 +0.1 610,782 - ABIE53_004422 0.18 +0.5 610,782 - ABIE53_004422 0.18 -0.2 610,782 - ABIE53_004422 0.18 +2.2 610,782 - ABIE53_004422 0.18 +0.6 610,782 - ABIE53_004422 0.18 -1.4 610,782 - ABIE53_004422 0.18 -0.1 610,782 - ABIE53_004422 0.18 -1.2 610,782 - ABIE53_004422 0.18 +3.2 610,782 - ABIE53_004422 0.18 +1.2 610,782 - ABIE53_004422 0.18 -0.6 610,813 + ABIE53_004422 0.20 +0.6 610,813 + ABIE53_004422 0.20 -0.4 610,813 + ABIE53_004422 0.20 +3.6 610,813 + ABIE53_004422 0.20 -0.9 610,813 + ABIE53_004422 0.20 +2.8 610,813 + ABIE53_004422 0.20 -1.1 610,814 - ABIE53_004422 0.20 +1.2 610,814 - ABIE53_004422 0.20 +2.2 610,851 + ABIE53_004422 0.22 +1.6 610,852 - ABIE53_004422 0.22 +0.5 610,852 - ABIE53_004422 0.22 +0.3 610,970 + ABIE53_004422 0.30 -0.3 610,971 - ABIE53_004422 0.30 -0.8 611,015 - ABIE53_004422 0.32 +0.6 611,015 - ABIE53_004422 0.32 +2.8 611,187 - ABIE53_004422 0.43 +0.0 611,187 - ABIE53_004422 0.43 -0.8 611,229 + ABIE53_004422 0.46 -0.4 611,230 - ABIE53_004422 0.46 -0.6 611,230 - ABIE53_004422 0.46 +0.0 611,231 + ABIE53_004422 0.46 -0.7 611,231 + ABIE53_004422 0.46 +1.2 611,231 + ABIE53_004422 0.46 +2.2 611,231 + ABIE53_004422 0.46 -1.7 611,231 + ABIE53_004422 0.46 +1.2 611,231 + ABIE53_004422 0.46 +1.0 611,231 + ABIE53_004422 0.46 -0.3 611,232 - ABIE53_004422 0.46 -1.5 611,232 - ABIE53_004422 0.46 -1.7 611,232 - ABIE53_004422 0.46 -0.2 611,232 - ABIE53_004422 0.46 -0.4 611,232 - ABIE53_004422 0.46 -0.8 611,232 - ABIE53_004422 0.46 -0.4 611,232 - ABIE53_004422 0.46 +0.2 611,232 - ABIE53_004422 0.46 -0.1 611,232 - ABIE53_004422 0.46 -2.7 611,232 - ABIE53_004422 0.46 -0.1 611,232 - ABIE53_004422 0.46 -0.4 611,316 + ABIE53_004422 0.51 -0.6 611,518 - ABIE53_004422 0.64 +0.4 611,546 + ABIE53_004422 0.66 +0.8 611,546 + ABIE53_004422 0.66 -0.4 611,546 + ABIE53_004422 0.66 -1.4 611,547 - ABIE53_004422 0.66 -1.0 611,547 - ABIE53_004422 0.66 -1.1 611,547 - ABIE53_004422 0.66 -0.1 611,555 + ABIE53_004422 0.67 -0.6 611,555 + ABIE53_004422 0.67 +0.2 611,585 + ABIE53_004422 0.68 +1.2 611,585 + ABIE53_004422 0.68 +0.3 611,585 + ABIE53_004422 0.68 +0.6 611,585 + ABIE53_004422 0.68 +2.2 611,586 - ABIE53_004422 0.68 +0.6 611,586 - ABIE53_004422 0.68 +0.6 611,586 - ABIE53_004422 0.68 -1.3 611,606 + ABIE53_004422 0.70 -0.4 611,606 + ABIE53_004422 0.70 -1.3 611,606 + ABIE53_004422 0.70 +1.0 611,607 - ABIE53_004422 0.70 -1.2 611,621 + ABIE53_004422 0.71 +0.1 611,621 + ABIE53_004422 0.71 +1.5 611,621 + ABIE53_004422 0.71 -1.1 611,621 + ABIE53_004422 0.71 -0.1 611,622 - ABIE53_004422 0.71 -1.0 611,622 - ABIE53_004422 0.71 -1.0 611,696 + ABIE53_004422 0.75 -0.8 611,696 + ABIE53_004422 0.75 -0.0 611,696 + ABIE53_004422 0.75 -0.9 611,696 + ABIE53_004422 0.75 +1.2 611,697 - ABIE53_004422 0.76 -0.5 611,697 - ABIE53_004422 0.76 -0.6 611,726 + ABIE53_004422 0.77 -0.7 611,726 + ABIE53_004422 0.77 +0.3 611,726 + ABIE53_004422 0.77 +0.2 611,726 + ABIE53_004422 0.77 +0.2 611,726 + ABIE53_004422 0.77 -0.3 611,726 + ABIE53_004422 0.77 +0.5 611,726 + ABIE53_004422 0.77 -1.0 611,726 + ABIE53_004422 0.77 +1.0 611,726 + ABIE53_004422 0.77 +0.8 611,727 - ABIE53_004422 0.77 +3.8 611,840 + ABIE53_004422 0.85 +0.4 611,841 - ABIE53_004422 0.85 -0.1 611,841 - ABIE53_004422 0.85 -0.0 611,841 - ABIE53_004422 0.85 +1.2 612,039 + -0.6 612,039 + -0.1 612,039 + -0.8 612,039 + -0.8 612,039 + +0.2 612,039 + +0.2 612,040 - -0.0 612,040 - +0.2 612,040 - -1.6 612,040 - -1.0 612,040 - +0.2 612,040 - +0.3 612,125 + -0.9 612,125 + -1.6 612,125 + -1.7 612,125 + +0.2 612,125 + +0.7 612,125 + +0.9 612,126 - +0.7 612,126 - -0.2 612,126 - -0.9 612,152 + +0.7 612,168 + -1.7 612,169 - +0.4 612,200 - +0.9 612,202 + -1.6 612,202 + -0.6 612,202 + -2.8 612,203 - +0.5 612,203 - -1.2 612,271 + -1.6 612,271 + -0.9 612,272 - -0.6 612,272 - -0.4 612,272 - -0.5 612,358 + ABIE53_004423 0.20 +0.4 612,359 - ABIE53_004423 0.20 +0.3 612,501 - ABIE53_004423 0.51 +2.2 612,501 - ABIE53_004423 0.51 +2.8 612,502 + ABIE53_004423 0.52 +0.1 612,509 + ABIE53_004423 0.53 -0.9 612,509 + ABIE53_004423 0.53 -0.7 612,510 - ABIE53_004423 0.53 -0.6 612,513 + ABIE53_004423 0.54 +0.1 612,513 + ABIE53_004423 0.54 -0.0 612,536 + ABIE53_004423 0.59 -0.5 612,550 - ABIE53_004423 0.62 -3.0 612,550 - ABIE53_004423 0.62 -1.9 612,550 - ABIE53_004423 0.62 -0.8 612,683 + +0.8 612,684 - -0.1 612,684 - +0.2 612,708 - -0.6 612,708 - +0.0 612,708 - +1.1 612,708 - +0.4 612,708 - -1.2 612,720 + -1.0 612,721 - +1.4 612,803 + ABIE53_004424 0.17 -0.4 612,803 + ABIE53_004424 0.17 +0.6 612,803 + ABIE53_004424 0.17 -0.9 612,803 + ABIE53_004424 0.17 +0.3 612,804 - ABIE53_004424 0.17 -2.2 612,804 - ABIE53_004424 0.17 -0.1 612,804 - ABIE53_004424 0.17 -1.4 612,833 + ABIE53_004424 0.23 -0.6 612,834 - ABIE53_004424 0.23 -1.6 612,834 - ABIE53_004424 0.23 +1.2 612,834 - ABIE53_004424 0.23 -0.8 612,848 - ABIE53_004424 0.25 -0.8 612,871 - ABIE53_004424 0.29 -0.5 612,911 + ABIE53_004424 0.36 -1.3 613,012 - ABIE53_004424 0.54 -0.7 613,012 - ABIE53_004424 0.54 -0.4
Or see this region's nucleotide sequence