Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000080

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000079 and ABIE53_000080 are separated by 500 nucleotidesABIE53_000080 and ABIE53_000081 are separated by 53 nucleotides ABIE53_000079: ABIE53_000079 - flagellar hook-length control protein FliK, at 91,504 to 93,027 _000079 ABIE53_000080: ABIE53_000080 - flagellar FliL protein, at 93,528 to 94,025 _000080 ABIE53_000081: ABIE53_000081 - flagellar motor switch protein FliM, at 94,079 to 95,077 _000081 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.714 kb on + strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.715 kb on - strand, within ABIE53_000079at 92.814 kb on + strand, within ABIE53_000079at 92.815 kb on - strand, within ABIE53_000079at 92.997 kb on + strandat 92.997 kb on + strandat 92.997 kb on + strandat 92.997 kb on + strandat 92.997 kb on + strandat 92.997 kb on + strandat 92.997 kb on + strandat 92.997 kb on + strandat 92.998 kb on - strandat 92.998 kb on - strandat 92.998 kb on - strandat 92.998 kb on - strandat 93.015 kb on + strandat 93.016 kb on - strandat 93.182 kb on + strandat 93.182 kb on + strandat 93.182 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.184 kb on + strandat 93.236 kb on - strandat 93.236 kb on - strandat 93.360 kb on - strandat 93.433 kb on + strandat 93.433 kb on + strandat 93.434 kb on - strandat 93.434 kb on - strandat 93.434 kb on - strandat 93.443 kb on + strandat 93.444 kb on - strandat 93.493 kb on + strandat 93.493 kb on + strandat 93.494 kb on - strandat 93.494 kb on - strandat 93.506 kb on - strandat 94.060 kb on + strandat 94.061 kb on - strandat 94.074 kb on - strandat 94.135 kb on - strandat 94.176 kb on + strandat 94.177 kb on - strandat 94.177 kb on - strandat 94.177 kb on - strandat 94.177 kb on - strandat 94.177 kb on - strandat 94.182 kb on + strand, within ABIE53_000081at 94.182 kb on + strand, within ABIE53_000081at 94.182 kb on + strand, within ABIE53_000081at 94.182 kb on + strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.183 kb on - strand, within ABIE53_000081at 94.190 kb on + strand, within ABIE53_000081at 94.190 kb on + strand, within ABIE53_000081at 94.190 kb on + strand, within ABIE53_000081at 94.190 kb on + strand, within ABIE53_000081at 94.191 kb on - strand, within ABIE53_000081at 94.191 kb on - strand, within ABIE53_000081at 94.343 kb on + strand, within ABIE53_000081at 94.343 kb on + strand, within ABIE53_000081at 94.343 kb on + strand, within ABIE53_000081at 94.343 kb on + strand, within ABIE53_000081at 94.344 kb on - strand, within ABIE53_000081at 94.344 kb on - strand, within ABIE53_000081at 94.344 kb on - strand, within ABIE53_000081at 94.344 kb on - strand, within ABIE53_000081at 94.572 kb on - strand, within ABIE53_000081at 94.572 kb on - strand, within ABIE53_000081at 94.572 kb on - strand, within ABIE53_000081at 94.572 kb on - strand, within ABIE53_000081at 94.572 kb on - strand, within ABIE53_000081at 94.609 kb on - strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.613 kb on + strand, within ABIE53_000081at 94.614 kb on - strand, within ABIE53_000081at 94.614 kb on - strand, within ABIE53_000081at 94.614 kb on - strand, within ABIE53_000081at 94.614 kb on - strand, within ABIE53_000081at 94.614 kb on - strand, within ABIE53_000081at 94.614 kb on - strand, within ABIE53_000081at 94.736 kb on + strand, within ABIE53_000081at 94.737 kb on - strand, within ABIE53_000081at 94.737 kb on - strand, within ABIE53_000081at 94.737 kb on - strand, within ABIE53_000081at 94.992 kb on - strandat 95.012 kb on + strandat 95.012 kb on + strandat 95.013 kb on - strandat 95.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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92,714 + ABIE53_000079 0.79 +3.9
92,714 + ABIE53_000079 0.79 +3.3
92,714 + ABIE53_000079 0.79 +3.6
92,714 + ABIE53_000079 0.79 +3.4
92,714 + ABIE53_000079 0.79 +3.1
92,714 + ABIE53_000079 0.79 +0.9
92,714 + ABIE53_000079 0.79 +3.7
92,714 + ABIE53_000079 0.79 +3.6
92,714 + ABIE53_000079 0.79 +3.2
92,714 + ABIE53_000079 0.79 +5.5
92,714 + ABIE53_000079 0.79 +3.0
92,714 + ABIE53_000079 0.79 +3.5
92,714 + ABIE53_000079 0.79 +3.6
92,714 + ABIE53_000079 0.79 +2.5
92,714 + ABIE53_000079 0.79 +2.9
92,714 + ABIE53_000079 0.79 +2.6
92,714 + ABIE53_000079 0.79 +4.2
92,714 + ABIE53_000079 0.79 +3.9
92,714 + ABIE53_000079 0.79 +3.5
92,714 + ABIE53_000079 0.79 +1.5
92,715 - ABIE53_000079 0.79 +2.9
92,715 - ABIE53_000079 0.79 +3.0
92,715 - ABIE53_000079 0.79 +3.0
92,715 - ABIE53_000079 0.79 +3.5
92,715 - ABIE53_000079 0.79 +4.0
92,715 - ABIE53_000079 0.79 +2.5
92,715 - ABIE53_000079 0.79 +3.5
92,715 - ABIE53_000079 0.79 +2.6
92,715 - ABIE53_000079 0.79 +2.9
92,715 - ABIE53_000079 0.79 +3.0
92,715 - ABIE53_000079 0.79 +1.7
92,715 - ABIE53_000079 0.79 +1.4
92,715 - ABIE53_000079 0.79 +3.4
92,715 - ABIE53_000079 0.79 +2.9
92,814 + ABIE53_000079 0.86 +3.0
92,815 - ABIE53_000079 0.86 +3.7
92,997 + +2.9
92,997 + +2.4
92,997 + +3.1
92,997 + +2.5
92,997 + +2.7
92,997 + +2.7
92,997 + +2.3
92,997 + +2.1
92,998 - +1.5
92,998 - +2.6
92,998 - +3.2
92,998 - +2.8
93,015 + +3.8
93,016 - +2.6
93,182 + -1.0
93,182 + -0.1
93,182 + -1.3
93,184 + +2.1
93,184 + +1.1
93,184 + -0.7
93,184 + -0.5
93,184 + +0.1
93,184 + +1.1
93,184 + -0.5
93,184 + -0.5
93,184 + -0.8
93,184 + +0.2
93,184 + +0.5
93,236 - +1.1
93,236 - -1.2
93,360 - +0.8
93,433 + +0.5
93,433 + -0.0
93,434 - +3.6
93,434 - +4.2
93,434 - +3.7
93,443 + -0.1
93,444 - +3.4
93,493 + -1.6
93,493 + +1.1
93,494 - +3.6
93,494 - +3.2
93,506 - +3.9
94,060 + -1.2
94,061 - +3.5
94,074 - +3.6
94,135 - +4.0
94,176 + +3.4
94,177 - +3.2
94,177 - +3.2
94,177 - +4.0
94,177 - +1.6
94,177 - +3.5
94,182 + ABIE53_000081 0.10 +2.5
94,182 + ABIE53_000081 0.10 +1.5
94,182 + ABIE53_000081 0.10 +1.7
94,182 + ABIE53_000081 0.10 -0.3
94,183 - ABIE53_000081 0.10 +3.3
94,183 - ABIE53_000081 0.10 +4.1
94,183 - ABIE53_000081 0.10 +3.7
94,183 - ABIE53_000081 0.10 +4.4
94,183 - ABIE53_000081 0.10 +3.0
94,183 - ABIE53_000081 0.10 +1.9
94,183 - ABIE53_000081 0.10 +3.1
94,183 - ABIE53_000081 0.10 +3.2
94,183 - ABIE53_000081 0.10 +4.2
94,183 - ABIE53_000081 0.10 +2.7
94,183 - ABIE53_000081 0.10 +2.2
94,190 + ABIE53_000081 0.11 +3.2
94,190 + ABIE53_000081 0.11 +2.8
94,190 + ABIE53_000081 0.11 +3.1
94,190 + ABIE53_000081 0.11 +1.6
94,191 - ABIE53_000081 0.11 +3.5
94,191 - ABIE53_000081 0.11 +3.7
94,343 + ABIE53_000081 0.26 +3.0
94,343 + ABIE53_000081 0.26 +4.1
94,343 + ABIE53_000081 0.26 +2.5
94,343 + ABIE53_000081 0.26 +2.3
94,344 - ABIE53_000081 0.27 +2.9
94,344 - ABIE53_000081 0.27 +2.1
94,344 - ABIE53_000081 0.27 +3.3
94,344 - ABIE53_000081 0.27 +3.2
94,572 - ABIE53_000081 0.49 +4.7
94,572 - ABIE53_000081 0.49 +3.1
94,572 - ABIE53_000081 0.49 +3.6
94,572 - ABIE53_000081 0.49 +3.6
94,572 - ABIE53_000081 0.49 +3.4
94,609 - ABIE53_000081 0.53 +4.1
94,613 + ABIE53_000081 0.53 +2.1
94,613 + ABIE53_000081 0.53 +2.4
94,613 + ABIE53_000081 0.53 +3.0
94,613 + ABIE53_000081 0.53 +2.6
94,613 + ABIE53_000081 0.53 +2.4
94,613 + ABIE53_000081 0.53 +2.4
94,613 + ABIE53_000081 0.53 +1.8
94,613 + ABIE53_000081 0.53 +2.6
94,614 - ABIE53_000081 0.54 +3.5
94,614 - ABIE53_000081 0.54 +4.0
94,614 - ABIE53_000081 0.54 +2.8
94,614 - ABIE53_000081 0.54 +1.8
94,614 - ABIE53_000081 0.54 +3.5
94,614 - ABIE53_000081 0.54 +2.3
94,736 + ABIE53_000081 0.66 +2.1
94,737 - ABIE53_000081 0.66 +3.6
94,737 - ABIE53_000081 0.66 +4.0
94,737 - ABIE53_000081 0.66 +3.6
94,992 - +4.9
95,012 + +1.5
95,012 + +3.0
95,013 - +3.1
95,013 - +3.3

Or see this region's nucleotide sequence