Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02882 and SMc02883 are separated by 76 nucleotides SMc02883 and SMc02884 are separated by 75 nucleotides SMc02884 and SMc02885 are separated by 284 nucleotides SMc02885 and SMc02886 are separated by 52 nucleotides
SMc02882: SMc02882 - CysZ-like protein, at 238,922 to 239,656
SMc02882
SMc02883: SMc02883 - hypothetical protein, at 239,733 to 239,945
SMc02883
SMc02884: SMc02884 - lipoprotein, at 240,021 to 241,013
SMc02884
SMc02885: SMc02885 - methionine sulfoxide reductase A, at 241,298 to 241,951
SMc02885
SMc02886: SMc02886 - signal peptide protein, at 242,004 to 242,321
SMc02886
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.405 kb on + strand, within SMc02882 at 239.940 kb on + strand at 239.940 kb on + strand at 239.940 kb on + strand at 240.047 kb on + strand at 240.050 kb on - strand at 240.236 kb on - strand, within SMc02884 at 240.382 kb on + strand, within SMc02884 at 240.382 kb on + strand, within SMc02884 at 240.383 kb on - strand, within SMc02884 at 240.473 kb on - strand, within SMc02884 at 240.489 kb on + strand, within SMc02884 at 240.489 kb on + strand, within SMc02884 at 240.489 kb on + strand, within SMc02884 at 240.489 kb on + strand, within SMc02884 at 240.489 kb on + strand, within SMc02884 at 240.524 kb on - strand, within SMc02884 at 240.622 kb on + strand, within SMc02884 at 240.622 kb on + strand, within SMc02884 at 240.623 kb on - strand, within SMc02884 at 240.928 kb on + strand at 240.929 kb on - strand at 241.016 kb on + strand at 241.017 kb on - strand at 241.017 kb on - strand at 241.235 kb on - strand at 241.250 kb on + strand at 241.250 kb on + strand at 241.250 kb on + strand at 241.251 kb on - strand at 241.258 kb on - strand at 241.258 kb on - strand at 241.398 kb on - strand, within SMc02885 at 241.446 kb on + strand, within SMc02885 at 241.446 kb on + strand, within SMc02885 at 241.447 kb on - strand, within SMc02885 at 241.513 kb on - strand, within SMc02885 at 241.513 kb on - strand, within SMc02885 at 241.518 kb on + strand, within SMc02885 at 241.519 kb on - strand, within SMc02885 at 241.534 kb on - strand, within SMc02885 at 241.635 kb on + strand, within SMc02885 at 241.635 kb on + strand, within SMc02885 at 241.635 kb on + strand, within SMc02885 at 241.636 kb on - strand, within SMc02885 at 241.636 kb on - strand, within SMc02885 at 241.738 kb on - strand, within SMc02885 at 241.789 kb on + strand, within SMc02885 at 241.789 kb on + strand, within SMc02885
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 239,405 + SMc02882 0.66 +0.0 239,940 + -0.2 239,940 + -0.1 239,940 + +2.0 240,047 + -0.4 240,050 - -0.8 240,236 - SMc02884 0.22 -1.3 240,382 + SMc02884 0.36 +0.6 240,382 + SMc02884 0.36 -1.1 240,383 - SMc02884 0.36 -2.3 240,473 - SMc02884 0.46 -1.0 240,489 + SMc02884 0.47 -1.8 240,489 + SMc02884 0.47 -0.9 240,489 + SMc02884 0.47 -0.2 240,489 + SMc02884 0.47 -1.2 240,489 + SMc02884 0.47 -0.6 240,524 - SMc02884 0.51 -1.3 240,622 + SMc02884 0.61 -1.5 240,622 + SMc02884 0.61 -2.6 240,623 - SMc02884 0.61 -1.2 240,928 + -0.9 240,929 - +0.7 241,016 + -1.0 241,017 - -0.1 241,017 - -0.5 241,235 - +0.8 241,250 + -0.3 241,250 + -0.0 241,250 + +0.0 241,251 - -0.4 241,258 - +0.5 241,258 - +0.3 241,398 - SMc02885 0.15 -1.0 241,446 + SMc02885 0.23 +0.7 241,446 + SMc02885 0.23 -0.4 241,447 - SMc02885 0.23 -0.0 241,513 - SMc02885 0.33 -0.5 241,513 - SMc02885 0.33 -0.5 241,518 + SMc02885 0.34 +1.3 241,519 - SMc02885 0.34 -0.1 241,534 - SMc02885 0.36 +0.7 241,635 + SMc02885 0.52 +1.3 241,635 + SMc02885 0.52 +0.2 241,635 + SMc02885 0.52 -0.2 241,636 - SMc02885 0.52 -0.1 241,636 - SMc02885 0.52 -0.2 241,738 - SMc02885 0.67 +0.1 241,789 + SMc02885 0.75 -0.7 241,789 + SMc02885 0.75 -0.9
Or see this region's nucleotide sequence