Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02368 and SMc02369 are separated by 10 nucleotides SMc02369 and SMc02370 are separated by 362 nucleotides
SMc02368: SMc02368 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 1,116,048 to 1,119,008
SMc02368
SMc02369: SMc02369 - sensor histidine kinase transmembrane protein, at 1,119,019 to 1,121,337
SMc02369
SMc02370: SMc02370 - aminopeptidase N, at 1,121,700 to 1,124,354
SMc02370
Position (kb)
1119
1120
1121
1122 Strain fitness (log2 ratio)
-1
0
1 at 1118.350 kb on - strand, within SMc02368 at 1118.350 kb on - strand, within SMc02368 at 1118.350 kb on - strand, within SMc02368 at 1118.425 kb on - strand, within SMc02368 at 1118.624 kb on - strand, within SMc02368 at 1118.624 kb on - strand, within SMc02368 at 1118.710 kb on + strand, within SMc02368 at 1118.710 kb on + strand, within SMc02368 at 1118.711 kb on - strand, within SMc02368 at 1118.711 kb on - strand, within SMc02368 at 1118.711 kb on - strand, within SMc02368 at 1118.735 kb on + strand at 1118.735 kb on + strand at 1118.919 kb on + strand at 1119.007 kb on - strand at 1121.536 kb on - strand at 1121.553 kb on - strand at 1121.846 kb on + strand at 1121.846 kb on + strand at 1121.874 kb on - strand at 1121.874 kb on - strand at 1122.215 kb on + strand, within SMc02370 at 1122.215 kb on + strand, within SMc02370 at 1122.253 kb on + strand, within SMc02370 at 1122.253 kb on + strand, within SMc02370 at 1122.262 kb on + strand, within SMc02370 at 1122.263 kb on - strand, within SMc02370
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,118,350 - SMc02368 0.78 +1.3 1,118,350 - SMc02368 0.78 +0.5 1,118,350 - SMc02368 0.78 +0.2 1,118,425 - SMc02368 0.80 +0.1 1,118,624 - SMc02368 0.87 +1.5 1,118,624 - SMc02368 0.87 +0.7 1,118,710 + SMc02368 0.90 -0.2 1,118,710 + SMc02368 0.90 +0.1 1,118,711 - SMc02368 0.90 +0.4 1,118,711 - SMc02368 0.90 -0.1 1,118,711 - SMc02368 0.90 -0.1 1,118,735 + +0.6 1,118,735 + -0.1 1,118,919 + +0.8 1,119,007 - -0.0 1,121,536 - -0.4 1,121,553 - -1.5 1,121,846 + +0.2 1,121,846 + +0.0 1,121,874 - -0.2 1,121,874 - +0.5 1,122,215 + SMc02370 0.19 +0.4 1,122,215 + SMc02370 0.19 -0.4 1,122,253 + SMc02370 0.21 -0.2 1,122,253 + SMc02370 0.21 -0.1 1,122,262 + SMc02370 0.21 +0.7 1,122,263 - SMc02370 0.21 +1.3
Or see this region's nucleotide sequence