Strain Fitness in Sinorhizobium meliloti 1021 around SMc02343

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02342 and SMc02343 are separated by 93 nucleotidesSMc02343 and SMc02344 are separated by 141 nucleotides SMc02342: SMc02342 - transketolase, at 2,763,602 to 2,765,596 SMc02342 SMc02343: SMc02343 - transport transmembrane protein, at 2,765,690 to 2,767,129 SMc02343 SMc02344: SMc02344 - periplasmic binding protein, at 2,767,271 to 2,768,305 SMc02344 Position (kb) 2765 2766 2767 2768Strain fitness (log2 ratio) -2 -1 0 1 2at 2765.052 kb on + strand, within SMc02342at 2765.111 kb on + strand, within SMc02342at 2765.111 kb on + strand, within SMc02342at 2765.147 kb on + strand, within SMc02342at 2765.148 kb on + strand, within SMc02342at 2765.149 kb on - strand, within SMc02342at 2765.149 kb on - strand, within SMc02342at 2765.351 kb on - strand, within SMc02342at 2765.382 kb on + strand, within SMc02342at 2765.596 kb on + strandat 2765.596 kb on + strandat 2765.597 kb on - strandat 2765.886 kb on - strand, within SMc02343at 2766.915 kb on - strand, within SMc02343at 2766.915 kb on - strand, within SMc02343at 2766.979 kb on + strand, within SMc02343at 2766.980 kb on - strand, within SMc02343at 2767.262 kb on + strandat 2767.265 kb on + strandat 2767.266 kb on - strandat 2767.266 kb on - strandat 2767.308 kb on + strandat 2767.309 kb on - strandat 2767.431 kb on + strand, within SMc02344at 2767.886 kb on + strand, within SMc02344at 2767.887 kb on - strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.017 kb on - strand, within SMc02344at 2768.017 kb on - strand, within SMc02344

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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2,765,052 + SMc02342 0.73 +0.2
2,765,111 + SMc02342 0.76 +0.2
2,765,111 + SMc02342 0.76 -1.0
2,765,147 + SMc02342 0.77 +0.1
2,765,148 + SMc02342 0.77 -0.9
2,765,149 - SMc02342 0.78 -0.3
2,765,149 - SMc02342 0.78 -0.8
2,765,351 - SMc02342 0.88 +0.3
2,765,382 + SMc02342 0.89 +0.1
2,765,596 + +0.8
2,765,596 + -0.1
2,765,597 - -1.5
2,765,886 - SMc02343 0.14 +0.6
2,766,915 - SMc02343 0.85 -0.1
2,766,915 - SMc02343 0.85 +0.1
2,766,979 + SMc02343 0.90 +1.1
2,766,980 - SMc02343 0.90 +0.4
2,767,262 + +0.5
2,767,265 + -0.0
2,767,266 - -2.7
2,767,266 - -0.0
2,767,308 + +0.8
2,767,309 - +1.2
2,767,431 + SMc02344 0.15 -0.0
2,767,886 + SMc02344 0.59 +0.8
2,767,887 - SMc02344 0.60 -0.6
2,768,016 + SMc02344 0.72 +0.2
2,768,016 + SMc02344 0.72 -0.0
2,768,016 + SMc02344 0.72 -0.3
2,768,016 + SMc02344 0.72 -0.2
2,768,017 - SMc02344 0.72 +1.8
2,768,017 - SMc02344 0.72 +0.1

Or see this region's nucleotide sequence