Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02342 and SMc02343 are separated by 93 nucleotides SMc02343 and SMc02344 are separated by 141 nucleotides
SMc02342: SMc02342 - transketolase, at 2,763,602 to 2,765,596
SMc02342
SMc02343: SMc02343 - transport transmembrane protein, at 2,765,690 to 2,767,129
SMc02343
SMc02344: SMc02344 - periplasmic binding protein, at 2,767,271 to 2,768,305
SMc02344
Position (kb)
2765
2766
2767
2768 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2765.052 kb on + strand, within SMc02342 at 2765.111 kb on + strand, within SMc02342 at 2765.111 kb on + strand, within SMc02342 at 2765.147 kb on + strand, within SMc02342 at 2765.148 kb on + strand, within SMc02342 at 2765.149 kb on - strand, within SMc02342 at 2765.149 kb on - strand, within SMc02342 at 2765.351 kb on - strand, within SMc02342 at 2765.382 kb on + strand, within SMc02342 at 2765.596 kb on + strand at 2765.596 kb on + strand at 2765.597 kb on - strand at 2765.886 kb on - strand, within SMc02343 at 2766.915 kb on - strand, within SMc02343 at 2766.915 kb on - strand, within SMc02343 at 2766.979 kb on + strand, within SMc02343 at 2766.980 kb on - strand, within SMc02343 at 2767.262 kb on + strand at 2767.265 kb on + strand at 2767.266 kb on - strand at 2767.266 kb on - strand at 2767.308 kb on + strand at 2767.309 kb on - strand at 2767.431 kb on + strand, within SMc02344 at 2767.886 kb on + strand, within SMc02344 at 2767.887 kb on - strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.017 kb on - strand, within SMc02344 at 2768.017 kb on - strand, within SMc02344
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 2,765,052 + SMc02342 0.73 +0.2 2,765,111 + SMc02342 0.76 +0.2 2,765,111 + SMc02342 0.76 -1.0 2,765,147 + SMc02342 0.77 +0.1 2,765,148 + SMc02342 0.77 -0.9 2,765,149 - SMc02342 0.78 -0.3 2,765,149 - SMc02342 0.78 -0.8 2,765,351 - SMc02342 0.88 +0.3 2,765,382 + SMc02342 0.89 +0.1 2,765,596 + +0.8 2,765,596 + -0.1 2,765,597 - -1.5 2,765,886 - SMc02343 0.14 +0.6 2,766,915 - SMc02343 0.85 -0.1 2,766,915 - SMc02343 0.85 +0.1 2,766,979 + SMc02343 0.90 +1.1 2,766,980 - SMc02343 0.90 +0.4 2,767,262 + +0.5 2,767,265 + -0.0 2,767,266 - -2.7 2,767,266 - -0.0 2,767,308 + +0.8 2,767,309 - +1.2 2,767,431 + SMc02344 0.15 -0.0 2,767,886 + SMc02344 0.59 +0.8 2,767,887 - SMc02344 0.60 -0.6 2,768,016 + SMc02344 0.72 +0.2 2,768,016 + SMc02344 0.72 -0.0 2,768,016 + SMc02344 0.72 -0.3 2,768,016 + SMc02344 0.72 -0.2 2,768,017 - SMc02344 0.72 +1.8 2,768,017 - SMc02344 0.72 +0.1
Or see this region's nucleotide sequence