Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02171 and SMc02170 are separated by 281 nucleotides SMc02170 and SMc02169 overlap by 1 nucleotides SMc02169 and SMc02167 overlap by 4 nucleotides
SMc02171: SMc02171 - periplasmic binding ABC transporter protein, at 523,892 to 524,917
SMc02171
SMc02170: SMc02170 - ABC transporter permease, at 525,199 to 526,281
SMc02170
SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063
SMc02169
SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680
SMc02167
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 524.691 kb on + strand, within SMc02171 at 524.732 kb on + strand, within SMc02171 at 524.801 kb on - strand, within SMc02171 at 525.272 kb on + strand at 525.273 kb on - strand at 525.273 kb on - strand at 525.273 kb on - strand at 525.294 kb on + strand at 525.629 kb on - strand, within SMc02170 at 525.672 kb on + strand, within SMc02170 at 525.824 kb on - strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.896 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.973 kb on + strand, within SMc02170 at 525.974 kb on - strand, within SMc02170 at 525.974 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 526.065 kb on + strand, within SMc02170 at 526.210 kb on + strand at 526.210 kb on + strand at 526.211 kb on - strand at 526.211 kb on - strand at 526.272 kb on - strand at 526.327 kb on - strand at 526.435 kb on + strand, within SMc02169 at 527.152 kb on + strand, within SMc02167
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 524,691 + SMc02171 0.78 -1.5 524,732 + SMc02171 0.82 -1.4 524,801 - SMc02171 0.89 -2.5 525,272 + -0.4 525,273 - -1.9 525,273 - -2.2 525,273 - -3.1 525,294 + -1.4 525,629 - SMc02170 0.40 -0.9 525,672 + SMc02170 0.44 -1.9 525,824 - SMc02170 0.58 -1.9 525,865 + SMc02170 0.61 -2.7 525,865 + SMc02170 0.61 -3.2 525,895 + SMc02170 0.64 -2.1 525,895 + SMc02170 0.64 -1.7 525,895 + SMc02170 0.64 -2.5 525,895 + SMc02170 0.64 -1.5 525,896 - SMc02170 0.64 -2.0 525,902 - SMc02170 0.65 -2.0 525,902 - SMc02170 0.65 -1.3 525,973 + SMc02170 0.71 -1.0 525,974 - SMc02170 0.72 +0.1 525,974 - SMc02170 0.72 -1.4 525,976 - SMc02170 0.72 -1.0 525,976 - SMc02170 0.72 -2.8 525,976 - SMc02170 0.72 -0.9 526,065 + SMc02170 0.80 -2.0 526,210 + -2.0 526,210 + -2.4 526,211 - -1.4 526,211 - -1.8 526,272 - -1.3 526,327 - -2.2 526,435 + SMc02169 0.20 -1.6 527,152 + SMc02167 0.15 +1.3
Or see this region's nucleotide sequence