Strain Fitness in Sinorhizobium meliloti 1021 around SMc01970

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01969 and SMc01970 are separated by 5 nucleotidesSMc01970 and SMc01971 are separated by 193 nucleotides SMc01969: SMc01969 - hypothetical protein, at 2,691,652 to 2,692,830 SMc01969 SMc01970: SMc01970 - hypothetical protein, at 2,692,836 to 2,693,681 SMc01970 SMc01971: SMc01971 - aldehyde dehydrogenase, at 2,693,875 to 2,695,308 SMc01971 Position (kb) 2692 2693 2694Strain fitness (log2 ratio) -1 0 1at 2691.836 kb on - strand, within SMc01969at 2691.836 kb on - strand, within SMc01969at 2691.836 kb on - strand, within SMc01969at 2691.884 kb on - strand, within SMc01969at 2691.908 kb on - strand, within SMc01969at 2691.908 kb on - strand, within SMc01969at 2692.024 kb on + strand, within SMc01969at 2692.025 kb on - strand, within SMc01969at 2692.196 kb on - strand, within SMc01969at 2692.222 kb on + strand, within SMc01969at 2692.270 kb on + strand, within SMc01969at 2692.354 kb on + strand, within SMc01969at 2692.627 kb on + strand, within SMc01969at 2693.006 kb on + strand, within SMc01970at 2693.006 kb on + strand, within SMc01970at 2693.007 kb on - strand, within SMc01970at 2693.203 kb on + strand, within SMc01970at 2693.204 kb on - strand, within SMc01970at 2693.213 kb on - strand, within SMc01970at 2693.486 kb on + strand, within SMc01970at 2693.487 kb on - strand, within SMc01970at 2693.782 kb on + strandat 2693.783 kb on - strandat 2693.966 kb on + strandat 2693.966 kb on + strandat 2693.987 kb on + strandat 2694.077 kb on + strand, within SMc01971at 2694.078 kb on - strand, within SMc01971at 2694.078 kb on - strand, within SMc01971at 2694.093 kb on - strand, within SMc01971at 2694.431 kb on + strand, within SMc01971at 2694.431 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.453 kb on + strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.454 kb on - strand, within SMc01971at 2694.619 kb on + strand, within SMc01971at 2694.620 kb on - strand, within SMc01971at 2694.620 kb on - strand, within SMc01971

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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2,691,836 - SMc01969 0.16 +0.6
2,691,836 - SMc01969 0.16 +0.4
2,691,836 - SMc01969 0.16 +0.4
2,691,884 - SMc01969 0.20 +0.4
2,691,908 - SMc01969 0.22 +1.5
2,691,908 - SMc01969 0.22 +0.3
2,692,024 + SMc01969 0.32 +0.3
2,692,025 - SMc01969 0.32 -0.5
2,692,196 - SMc01969 0.46 -0.6
2,692,222 + SMc01969 0.48 -0.3
2,692,270 + SMc01969 0.52 -1.2
2,692,354 + SMc01969 0.60 -0.2
2,692,627 + SMc01969 0.83 -0.3
2,693,006 + SMc01970 0.20 -0.8
2,693,006 + SMc01970 0.20 -0.1
2,693,007 - SMc01970 0.20 -0.8
2,693,203 + SMc01970 0.43 +0.1
2,693,204 - SMc01970 0.43 -0.2
2,693,213 - SMc01970 0.45 -0.1
2,693,486 + SMc01970 0.77 -0.4
2,693,487 - SMc01970 0.77 -0.9
2,693,782 + +0.1
2,693,783 - -1.0
2,693,966 + -0.2
2,693,966 + +0.0
2,693,987 + -0.3
2,694,077 + SMc01971 0.14 -1.0
2,694,078 - SMc01971 0.14 -0.2
2,694,078 - SMc01971 0.14 -0.2
2,694,093 - SMc01971 0.15 -0.1
2,694,431 + SMc01971 0.39 -1.2
2,694,431 + SMc01971 0.39 +1.2
2,694,453 + SMc01971 0.40 +0.1
2,694,453 + SMc01971 0.40 +0.3
2,694,453 + SMc01971 0.40 +0.4
2,694,453 + SMc01971 0.40 -0.2
2,694,453 + SMc01971 0.40 -0.4
2,694,453 + SMc01971 0.40 +0.3
2,694,453 + SMc01971 0.40 +0.8
2,694,453 + SMc01971 0.40 -0.4
2,694,453 + SMc01971 0.40 +1.6
2,694,454 - SMc01971 0.40 +0.3
2,694,454 - SMc01971 0.40 +0.4
2,694,454 - SMc01971 0.40 +0.3
2,694,454 - SMc01971 0.40 +0.3
2,694,454 - SMc01971 0.40 +0.1
2,694,454 - SMc01971 0.40 +0.5
2,694,454 - SMc01971 0.40 -0.5
2,694,454 - SMc01971 0.40 -0.2
2,694,619 + SMc01971 0.52 -0.5
2,694,620 - SMc01971 0.52 -0.5
2,694,620 - SMc01971 0.52 +0.0

Or see this region's nucleotide sequence