Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01969 and SMc01970 are separated by 5 nucleotides SMc01970 and SMc01971 are separated by 193 nucleotides
SMc01969: SMc01969 - hypothetical protein, at 2,691,652 to 2,692,830
SMc01969
SMc01970: SMc01970 - hypothetical protein, at 2,692,836 to 2,693,681
SMc01970
SMc01971: SMc01971 - aldehyde dehydrogenase, at 2,693,875 to 2,695,308
SMc01971
Position (kb)
2692
2693
2694 Strain fitness (log2 ratio)
-1
0
1 at 2691.836 kb on - strand, within SMc01969 at 2691.836 kb on - strand, within SMc01969 at 2691.836 kb on - strand, within SMc01969 at 2691.884 kb on - strand, within SMc01969 at 2691.908 kb on - strand, within SMc01969 at 2691.908 kb on - strand, within SMc01969 at 2692.024 kb on + strand, within SMc01969 at 2692.025 kb on - strand, within SMc01969 at 2692.196 kb on - strand, within SMc01969 at 2692.222 kb on + strand, within SMc01969 at 2692.270 kb on + strand, within SMc01969 at 2692.354 kb on + strand, within SMc01969 at 2692.627 kb on + strand, within SMc01969 at 2693.006 kb on + strand, within SMc01970 at 2693.006 kb on + strand, within SMc01970 at 2693.007 kb on - strand, within SMc01970 at 2693.203 kb on + strand, within SMc01970 at 2693.204 kb on - strand, within SMc01970 at 2693.213 kb on - strand, within SMc01970 at 2693.486 kb on + strand, within SMc01970 at 2693.487 kb on - strand, within SMc01970 at 2693.782 kb on + strand at 2693.783 kb on - strand at 2693.966 kb on + strand at 2693.966 kb on + strand at 2693.987 kb on + strand at 2694.077 kb on + strand, within SMc01971 at 2694.078 kb on - strand, within SMc01971 at 2694.078 kb on - strand, within SMc01971 at 2694.093 kb on - strand, within SMc01971 at 2694.431 kb on + strand, within SMc01971 at 2694.431 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.453 kb on + strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.454 kb on - strand, within SMc01971 at 2694.619 kb on + strand, within SMc01971 at 2694.620 kb on - strand, within SMc01971 at 2694.620 kb on - strand, within SMc01971
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 2,691,836 - SMc01969 0.16 +0.6 2,691,836 - SMc01969 0.16 +0.4 2,691,836 - SMc01969 0.16 +0.4 2,691,884 - SMc01969 0.20 +0.4 2,691,908 - SMc01969 0.22 +1.5 2,691,908 - SMc01969 0.22 +0.3 2,692,024 + SMc01969 0.32 +0.3 2,692,025 - SMc01969 0.32 -0.5 2,692,196 - SMc01969 0.46 -0.6 2,692,222 + SMc01969 0.48 -0.3 2,692,270 + SMc01969 0.52 -1.2 2,692,354 + SMc01969 0.60 -0.2 2,692,627 + SMc01969 0.83 -0.3 2,693,006 + SMc01970 0.20 -0.8 2,693,006 + SMc01970 0.20 -0.1 2,693,007 - SMc01970 0.20 -0.8 2,693,203 + SMc01970 0.43 +0.1 2,693,204 - SMc01970 0.43 -0.2 2,693,213 - SMc01970 0.45 -0.1 2,693,486 + SMc01970 0.77 -0.4 2,693,487 - SMc01970 0.77 -0.9 2,693,782 + +0.1 2,693,783 - -1.0 2,693,966 + -0.2 2,693,966 + +0.0 2,693,987 + -0.3 2,694,077 + SMc01971 0.14 -1.0 2,694,078 - SMc01971 0.14 -0.2 2,694,078 - SMc01971 0.14 -0.2 2,694,093 - SMc01971 0.15 -0.1 2,694,431 + SMc01971 0.39 -1.2 2,694,431 + SMc01971 0.39 +1.2 2,694,453 + SMc01971 0.40 +0.1 2,694,453 + SMc01971 0.40 +0.3 2,694,453 + SMc01971 0.40 +0.4 2,694,453 + SMc01971 0.40 -0.2 2,694,453 + SMc01971 0.40 -0.4 2,694,453 + SMc01971 0.40 +0.3 2,694,453 + SMc01971 0.40 +0.8 2,694,453 + SMc01971 0.40 -0.4 2,694,453 + SMc01971 0.40 +1.6 2,694,454 - SMc01971 0.40 +0.3 2,694,454 - SMc01971 0.40 +0.4 2,694,454 - SMc01971 0.40 +0.3 2,694,454 - SMc01971 0.40 +0.3 2,694,454 - SMc01971 0.40 +0.1 2,694,454 - SMc01971 0.40 +0.5 2,694,454 - SMc01971 0.40 -0.5 2,694,454 - SMc01971 0.40 -0.2 2,694,619 + SMc01971 0.52 -0.5 2,694,620 - SMc01971 0.52 -0.5 2,694,620 - SMc01971 0.52 +0.0
Or see this region's nucleotide sequence