Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01732 and SMc01731 are separated by 261 nucleotides SMc01731 and SMc01730 are separated by 70 nucleotides SMc01730 and SMc01729 are separated by 34 nucleotides
SMc01732: SMc01732 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 470,207 to 471,097
SMc01732
SMc01731: SMc01731 - hypothetical protein, at 471,359 to 472,258
SMc01731
SMc01730: SMc01730 - hypothetical protein, at 472,329 to 473,105
SMc01730
SMc01729: SMc01729 - hypothetical protein, at 473,140 to 474,054
SMc01729
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1 at 471.103 kb on - strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.110 kb on - strand at 471.142 kb on - strand at 471.142 kb on - strand at 471.142 kb on - strand at 471.263 kb on - strand at 471.274 kb on - strand at 471.285 kb on + strand at 471.285 kb on + strand at 471.485 kb on + strand, within SMc01731 at 471.485 kb on + strand, within SMc01731 at 471.497 kb on + strand, within SMc01731 at 471.498 kb on - strand, within SMc01731 at 471.498 kb on - strand, within SMc01731 at 471.704 kb on + strand, within SMc01731 at 471.704 kb on + strand, within SMc01731 at 471.705 kb on - strand, within SMc01731 at 471.705 kb on - strand, within SMc01731 at 471.705 kb on - strand, within SMc01731 at 471.705 kb on - strand, within SMc01731 at 471.705 kb on - strand, within SMc01731 at 471.708 kb on - strand, within SMc01731 at 471.765 kb on - strand, within SMc01731 at 471.773 kb on + strand, within SMc01731 at 471.773 kb on + strand, within SMc01731 at 471.773 kb on + strand, within SMc01731 at 471.774 kb on - strand, within SMc01731 at 471.774 kb on - strand, within SMc01731 at 471.774 kb on - strand, within SMc01731 at 471.774 kb on - strand, within SMc01731 at 471.774 kb on - strand, within SMc01731 at 472.331 kb on - strand at 472.429 kb on + strand, within SMc01730 at 472.751 kb on + strand, within SMc01730 at 472.752 kb on - strand, within SMc01730 at 472.752 kb on - strand, within SMc01730 at 472.846 kb on + strand, within SMc01730 at 472.847 kb on - strand, within SMc01730 at 472.875 kb on - strand, within SMc01730 at 472.903 kb on + strand, within SMc01730 at 472.904 kb on - strand, within SMc01730 at 472.904 kb on - strand, within SMc01730 at 472.955 kb on - strand, within SMc01730 at 472.955 kb on - strand, within SMc01730 at 473.046 kb on + strand at 473.047 kb on - strand at 473.047 kb on - strand at 473.139 kb on + strand at 473.139 kb on + strand at 473.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 471,103 - -0.8 471,109 + +0.6 471,109 + -0.1 471,109 + -0.2 471,109 + +0.6 471,110 - +0.0 471,142 - +0.1 471,142 - -0.3 471,142 - +0.4 471,263 - -0.0 471,274 - +0.8 471,285 + +0.5 471,285 + -0.7 471,485 + SMc01731 0.14 -0.2 471,485 + SMc01731 0.14 -0.0 471,497 + SMc01731 0.15 -1.3 471,498 - SMc01731 0.15 -0.7 471,498 - SMc01731 0.15 -0.8 471,704 + SMc01731 0.38 +0.8 471,704 + SMc01731 0.38 -0.5 471,705 - SMc01731 0.38 -0.9 471,705 - SMc01731 0.38 -0.6 471,705 - SMc01731 0.38 -0.4 471,705 - SMc01731 0.38 +0.4 471,705 - SMc01731 0.38 -0.9 471,708 - SMc01731 0.39 -0.0 471,765 - SMc01731 0.45 -0.6 471,773 + SMc01731 0.46 -1.2 471,773 + SMc01731 0.46 +0.0 471,773 + SMc01731 0.46 -1.0 471,774 - SMc01731 0.46 -0.2 471,774 - SMc01731 0.46 -1.2 471,774 - SMc01731 0.46 -0.1 471,774 - SMc01731 0.46 -0.2 471,774 - SMc01731 0.46 -0.3 472,331 - -0.0 472,429 + SMc01730 0.13 -0.1 472,751 + SMc01730 0.54 -1.4 472,752 - SMc01730 0.54 +0.2 472,752 - SMc01730 0.54 -0.4 472,846 + SMc01730 0.67 +1.1 472,847 - SMc01730 0.67 +0.4 472,875 - SMc01730 0.70 -1.0 472,903 + SMc01730 0.74 -0.2 472,904 - SMc01730 0.74 -0.1 472,904 - SMc01730 0.74 -0.0 472,955 - SMc01730 0.81 +0.1 472,955 - SMc01730 0.81 -0.2 473,046 + -0.1 473,047 - +0.3 473,047 - -0.1 473,139 + -0.1 473,139 + +0.3 473,140 - +0.1
Or see this region's nucleotide sequence