Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01023 and SMc01024 are separated by 122 nucleotides SMc01024 and SMc01025 are separated by 143 nucleotides SMc01025 and SMc01026 are separated by 152 nucleotides
SMc01023: SMc01023 - triosephosphate isomerase, at 1,548,277 to 1,549,047
SMc01023
SMc01024: SMc01024 - preprotein translocase subunit SecG, at 1,549,170 to 1,549,655
SMc01024
SMc01025: SMc01025 - CTP synthetase, at 1,549,799 to 1,551,427
SMc01025
SMc01026: SMc01026 - hypothetical protein, at 1,551,580 to 1,552,470
SMc01026
Position (kb)
1549
1550
1551
1552 Strain fitness (log2 ratio)
-1
0
1 at 1548.908 kb on - strand, within SMc01023 at 1549.018 kb on + strand at 1549.018 kb on + strand at 1549.019 kb on - strand at 1549.027 kb on + strand at 1549.027 kb on + strand at 1549.028 kb on - strand at 1549.028 kb on - strand at 1549.066 kb on + strand at 1549.444 kb on + strand, within SMc01024 at 1549.625 kb on + strand at 1551.426 kb on - strand at 1551.748 kb on + strand, within SMc01026 at 1551.748 kb on + strand, within SMc01026 at 1551.749 kb on - strand, within SMc01026 at 1552.168 kb on + strand, within SMc01026
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,548,908 - SMc01023 0.82 -0.5 1,549,018 + +0.1 1,549,018 + +0.0 1,549,019 - -0.7 1,549,027 + +0.3 1,549,027 + +0.3 1,549,028 - +0.0 1,549,028 - +0.1 1,549,066 + +0.0 1,549,444 + SMc01024 0.56 +0.5 1,549,625 + -0.9 1,551,426 - +0.5 1,551,748 + SMc01026 0.19 +0.4 1,551,748 + SMc01026 0.19 +0.1 1,551,749 - SMc01026 0.19 +0.6 1,552,168 + SMc01026 0.66 -0.3
Or see this region's nucleotide sequence