Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00922 and SMc00921 are separated by 189 nucleotides SMc00921 and SMc00931 are separated by 73 nucleotides SMc00931 and SMc00919 are separated by 232 nucleotides
SMc00922: SMc00922 - transporter transmembrane protein, at 860,384 to 861,841
SMc00922
SMc00921: SMc00921 - signal peptide protein, at 862,031 to 862,417
SMc00921
SMc00931: SMc00931 - hypothetical protein, at 862,491 to 862,916
SMc00931
SMc00919: SMc00919 - histidyl-tRNA synthetase, at 863,149 to 864,663
SMc00919
Position (kb) 862
863 Strain fitness (log2 ratio) -2
-1
0
1 at 861.069 kb on + strand, within SMc00922 at 861.111 kb on + strand, within SMc00922 at 861.112 kb on - strand, within SMc00922 at 861.255 kb on + strand, within SMc00922 at 861.255 kb on + strand, within SMc00922 at 861.373 kb on - strand, within SMc00922 at 861.373 kb on - strand, within SMc00922 at 861.495 kb on + strand, within SMc00922 at 861.712 kb on - strand at 861.712 kb on - strand at 861.712 kb on - strand at 861.712 kb on - strand at 861.715 kb on - strand at 861.807 kb on + strand at 861.808 kb on - strand at 861.834 kb on - strand at 862.022 kb on - strand at 862.032 kb on + strand at 862.033 kb on - strand at 862.418 kb on - strand at 862.562 kb on + strand, within SMc00931 at 862.563 kb on - strand, within SMc00931 at 862.563 kb on - strand, within SMc00931 at 862.670 kb on + strand, within SMc00931 at 862.671 kb on - strand, within SMc00931 at 862.671 kb on - strand, within SMc00931 at 862.703 kb on - strand, within SMc00931 at 862.773 kb on + strand, within SMc00931 at 862.773 kb on + strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.881 kb on + strand at 862.882 kb on - strand at 862.882 kb on - strand at 862.917 kb on - strand at 862.917 kb on - strand at 862.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 861,069 + SMc00922 0.47 -0.8 861,111 + SMc00922 0.50 +0.1 861,112 - SMc00922 0.50 -0.3 861,255 + SMc00922 0.60 -0.1 861,255 + SMc00922 0.60 -1.0 861,373 - SMc00922 0.68 +0.9 861,373 - SMc00922 0.68 -1.2 861,495 + SMc00922 0.76 +1.0 861,712 - +0.4 861,712 - +1.6 861,712 - +0.4 861,712 - +0.1 861,715 - -0.6 861,807 + -0.8 861,808 - -0.2 861,834 - +0.1 862,022 - +1.0 862,032 + +0.3 862,033 - -0.4 862,418 - +1.2 862,562 + SMc00931 0.17 -0.6 862,563 - SMc00931 0.17 +0.3 862,563 - SMc00931 0.17 -0.4 862,670 + SMc00931 0.42 -0.0 862,671 - SMc00931 0.42 -1.8 862,671 - SMc00931 0.42 +0.4 862,703 - SMc00931 0.50 +0.3 862,773 + SMc00931 0.66 -0.6 862,773 + SMc00931 0.66 +1.2 862,774 - SMc00931 0.66 -0.6 862,774 - SMc00931 0.66 +1.0 862,774 - SMc00931 0.66 -0.4 862,881 + -1.6 862,882 - +0.2 862,882 - +0.0 862,917 - -0.5 862,917 - -1.6 862,975 - +0.3
Or see this region's nucleotide sequence