Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00737 and SMc00736 are separated by 105 nucleotides SMc00736 and SMc00735 are separated by 152 nucleotides SMc00735 and SMc00734 are separated by 18 nucleotides
SMc00737: SMc00737 - hypothetical protein, at 2,844,485 to 2,845,042
SMc00737
SMc00736: SMc00736 - DNA-3-methyladenine DNA glycosylase, at 2,845,148 to 2,845,795
SMc00736
SMc00735: SMc00735 - glutamyl-Q tRNA(Asp) synthetase, at 2,845,948 to 2,846,844
SMc00735
SMc00734: SMc00734 - ribonuclease RNase BN (RBN) transmembrane protein, at 2,846,863 to 2,847,738
SMc00734
Position (kb)
2845
2846
2847 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2844.985 kb on + strand, within SMc00737 at 2844.988 kb on - strand at 2845.079 kb on + strand at 2845.079 kb on + strand at 2845.081 kb on + strand at 2845.082 kb on - strand at 2845.084 kb on + strand at 2845.084 kb on + strand at 2845.085 kb on - strand at 2845.129 kb on - strand at 2845.129 kb on - strand at 2845.191 kb on + strand at 2845.191 kb on + strand at 2845.191 kb on + strand at 2845.191 kb on + strand at 2845.194 kb on + strand at 2845.195 kb on - strand at 2845.206 kb on - strand at 2845.368 kb on + strand, within SMc00736 at 2845.368 kb on + strand, within SMc00736 at 2845.369 kb on - strand, within SMc00736 at 2845.369 kb on - strand, within SMc00736 at 2845.649 kb on + strand, within SMc00736 at 2845.649 kb on + strand, within SMc00736 at 2845.649 kb on + strand, within SMc00736 at 2845.766 kb on + strand at 2845.766 kb on + strand at 2845.766 kb on + strand at 2845.766 kb on + strand at 2845.766 kb on + strand at 2845.766 kb on + strand at 2845.767 kb on - strand at 2845.767 kb on - strand at 2845.821 kb on - strand at 2846.209 kb on + strand at 2846.210 kb on - strand, within SMc00735 at 2846.210 kb on - strand, within SMc00735 at 2846.416 kb on + strand, within SMc00735 at 2846.416 kb on + strand, within SMc00735 at 2846.416 kb on + strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.648 kb on - strand, within SMc00735 at 2846.707 kb on + strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.864 kb on + strand at 2846.865 kb on - strand at 2846.865 kb on - strand at 2846.916 kb on - strand at 2846.972 kb on + strand, within SMc00734 at 2846.972 kb on + strand, within SMc00734 at 2846.973 kb on - strand, within SMc00734 at 2846.973 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.026 kb on + strand, within SMc00734 at 2847.027 kb on - strand, within SMc00734 at 2847.045 kb on + strand, within SMc00734 at 2847.047 kb on + strand, within SMc00734 at 2847.047 kb on + strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.115 kb on + strand, within SMc00734 at 2847.115 kb on + strand, within SMc00734 at 2847.353 kb on + strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.380 kb on + strand, within SMc00734 at 2847.431 kb on + strand, within SMc00734 at 2847.432 kb on - strand, within SMc00734 at 2847.456 kb on + strand, within SMc00734 at 2847.456 kb on + strand, within SMc00734 at 2847.456 kb on + strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 2,844,985 + SMc00737 0.90 +0.4 2,844,988 - -0.2 2,845,079 + +0.5 2,845,079 + -1.0 2,845,081 + -1.2 2,845,082 - +0.2 2,845,084 + -0.7 2,845,084 + -0.6 2,845,085 - +0.5 2,845,129 - -0.7 2,845,129 - -0.1 2,845,191 + -0.4 2,845,191 + -0.9 2,845,191 + +0.7 2,845,191 + -0.1 2,845,194 + -2.4 2,845,195 - -0.1 2,845,206 - +0.2 2,845,368 + SMc00736 0.34 -0.1 2,845,368 + SMc00736 0.34 -1.2 2,845,369 - SMc00736 0.34 +1.1 2,845,369 - SMc00736 0.34 -1.6 2,845,649 + SMc00736 0.77 +0.6 2,845,649 + SMc00736 0.77 +0.3 2,845,649 + SMc00736 0.77 +0.3 2,845,766 + +0.2 2,845,766 + -0.2 2,845,766 + -0.2 2,845,766 + +0.3 2,845,766 + -0.5 2,845,766 + -0.1 2,845,767 - +0.2 2,845,767 - +0.4 2,845,821 - +0.0 2,846,209 + +1.9 2,846,210 - SMc00735 0.29 -0.5 2,846,210 - SMc00735 0.29 -0.3 2,846,416 + SMc00735 0.52 -0.2 2,846,416 + SMc00735 0.52 +0.6 2,846,416 + SMc00735 0.52 -0.7 2,846,579 - SMc00735 0.70 +0.1 2,846,579 - SMc00735 0.70 -0.2 2,846,579 - SMc00735 0.70 +0.5 2,846,579 - SMc00735 0.70 +0.3 2,846,648 - SMc00735 0.78 -0.8 2,846,707 + SMc00735 0.85 +0.4 2,846,708 - SMc00735 0.85 -0.0 2,846,708 - SMc00735 0.85 +0.1 2,846,708 - SMc00735 0.85 +0.2 2,846,708 - SMc00735 0.85 +0.9 2,846,708 - SMc00735 0.85 -0.2 2,846,708 - SMc00735 0.85 +0.7 2,846,864 + +0.9 2,846,865 - +0.3 2,846,865 - -0.0 2,846,916 - +0.2 2,846,972 + SMc00734 0.12 -0.5 2,846,972 + SMc00734 0.12 +0.3 2,846,973 - SMc00734 0.13 -0.7 2,846,973 - SMc00734 0.13 +0.2 2,847,015 - SMc00734 0.17 +0.5 2,847,015 - SMc00734 0.17 +0.3 2,847,015 - SMc00734 0.17 +0.1 2,847,015 - SMc00734 0.17 +0.5 2,847,015 - SMc00734 0.17 -1.1 2,847,026 + SMc00734 0.19 -0.4 2,847,027 - SMc00734 0.19 +0.0 2,847,045 + SMc00734 0.21 +0.4 2,847,047 + SMc00734 0.21 +1.2 2,847,047 + SMc00734 0.21 +0.1 2,847,048 - SMc00734 0.21 -0.1 2,847,048 - SMc00734 0.21 -0.4 2,847,048 - SMc00734 0.21 -0.2 2,847,048 - SMc00734 0.21 -0.9 2,847,115 + SMc00734 0.29 -1.5 2,847,115 + SMc00734 0.29 -0.4 2,847,353 + SMc00734 0.56 +0.1 2,847,354 - SMc00734 0.56 +0.9 2,847,354 - SMc00734 0.56 +0.6 2,847,354 - SMc00734 0.56 -0.0 2,847,354 - SMc00734 0.56 +0.4 2,847,380 + SMc00734 0.59 -0.8 2,847,431 + SMc00734 0.65 -0.2 2,847,432 - SMc00734 0.65 -0.1 2,847,456 + SMc00734 0.68 -0.8 2,847,456 + SMc00734 0.68 +0.2 2,847,456 + SMc00734 0.68 -0.8 2,847,457 - SMc00734 0.68 -0.5 2,847,457 - SMc00734 0.68 -0.4 2,847,457 - SMc00734 0.68 +0.1 2,847,457 - SMc00734 0.68 -0.0
Or see this region's nucleotide sequence