Strain Fitness in Sinorhizobium meliloti 1021 around SMc00735

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00737 and SMc00736 are separated by 105 nucleotidesSMc00736 and SMc00735 are separated by 152 nucleotidesSMc00735 and SMc00734 are separated by 18 nucleotides SMc00737: SMc00737 - hypothetical protein, at 2,844,485 to 2,845,042 SMc00737 SMc00736: SMc00736 - DNA-3-methyladenine DNA glycosylase, at 2,845,148 to 2,845,795 SMc00736 SMc00735: SMc00735 - glutamyl-Q tRNA(Asp) synthetase, at 2,845,948 to 2,846,844 SMc00735 SMc00734: SMc00734 - ribonuclease RNase BN (RBN) transmembrane protein, at 2,846,863 to 2,847,738 SMc00734 Position (kb) 2845 2846 2847Strain fitness (log2 ratio) -2 -1 0 1 2at 2844.985 kb on + strand, within SMc00737at 2844.988 kb on - strandat 2845.079 kb on + strandat 2845.079 kb on + strandat 2845.081 kb on + strandat 2845.082 kb on - strandat 2845.084 kb on + strandat 2845.084 kb on + strandat 2845.085 kb on - strandat 2845.129 kb on - strandat 2845.129 kb on - strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.194 kb on + strandat 2845.195 kb on - strandat 2845.206 kb on - strandat 2845.368 kb on + strand, within SMc00736at 2845.368 kb on + strand, within SMc00736at 2845.369 kb on - strand, within SMc00736at 2845.369 kb on - strand, within SMc00736at 2845.649 kb on + strand, within SMc00736at 2845.649 kb on + strand, within SMc00736at 2845.649 kb on + strand, within SMc00736at 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.767 kb on - strandat 2845.767 kb on - strandat 2845.821 kb on - strandat 2846.209 kb on + strandat 2846.210 kb on - strand, within SMc00735at 2846.210 kb on - strand, within SMc00735at 2846.416 kb on + strand, within SMc00735at 2846.416 kb on + strand, within SMc00735at 2846.416 kb on + strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.648 kb on - strand, within SMc00735at 2846.707 kb on + strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.864 kb on + strandat 2846.865 kb on - strandat 2846.865 kb on - strandat 2846.916 kb on - strandat 2846.972 kb on + strand, within SMc00734at 2846.972 kb on + strand, within SMc00734at 2846.973 kb on - strand, within SMc00734at 2846.973 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.026 kb on + strand, within SMc00734at 2847.027 kb on - strand, within SMc00734at 2847.045 kb on + strand, within SMc00734at 2847.047 kb on + strand, within SMc00734at 2847.047 kb on + strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.115 kb on + strand, within SMc00734at 2847.115 kb on + strand, within SMc00734at 2847.353 kb on + strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.380 kb on + strand, within SMc00734at 2847.431 kb on + strand, within SMc00734at 2847.432 kb on - strand, within SMc00734at 2847.456 kb on + strand, within SMc00734at 2847.456 kb on + strand, within SMc00734at 2847.456 kb on + strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.457 kb on - strand, within SMc00734

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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2,844,985 + SMc00737 0.90 +0.4
2,844,988 - -0.2
2,845,079 + +0.5
2,845,079 + -1.0
2,845,081 + -1.2
2,845,082 - +0.2
2,845,084 + -0.7
2,845,084 + -0.6
2,845,085 - +0.5
2,845,129 - -0.7
2,845,129 - -0.1
2,845,191 + -0.4
2,845,191 + -0.9
2,845,191 + +0.7
2,845,191 + -0.1
2,845,194 + -2.4
2,845,195 - -0.1
2,845,206 - +0.2
2,845,368 + SMc00736 0.34 -0.1
2,845,368 + SMc00736 0.34 -1.2
2,845,369 - SMc00736 0.34 +1.1
2,845,369 - SMc00736 0.34 -1.6
2,845,649 + SMc00736 0.77 +0.6
2,845,649 + SMc00736 0.77 +0.3
2,845,649 + SMc00736 0.77 +0.3
2,845,766 + +0.2
2,845,766 + -0.2
2,845,766 + -0.2
2,845,766 + +0.3
2,845,766 + -0.5
2,845,766 + -0.1
2,845,767 - +0.2
2,845,767 - +0.4
2,845,821 - +0.0
2,846,209 + +1.9
2,846,210 - SMc00735 0.29 -0.5
2,846,210 - SMc00735 0.29 -0.3
2,846,416 + SMc00735 0.52 -0.2
2,846,416 + SMc00735 0.52 +0.6
2,846,416 + SMc00735 0.52 -0.7
2,846,579 - SMc00735 0.70 +0.1
2,846,579 - SMc00735 0.70 -0.2
2,846,579 - SMc00735 0.70 +0.5
2,846,579 - SMc00735 0.70 +0.3
2,846,648 - SMc00735 0.78 -0.8
2,846,707 + SMc00735 0.85 +0.4
2,846,708 - SMc00735 0.85 -0.0
2,846,708 - SMc00735 0.85 +0.1
2,846,708 - SMc00735 0.85 +0.2
2,846,708 - SMc00735 0.85 +0.9
2,846,708 - SMc00735 0.85 -0.2
2,846,708 - SMc00735 0.85 +0.7
2,846,864 + +0.9
2,846,865 - +0.3
2,846,865 - -0.0
2,846,916 - +0.2
2,846,972 + SMc00734 0.12 -0.5
2,846,972 + SMc00734 0.12 +0.3
2,846,973 - SMc00734 0.13 -0.7
2,846,973 - SMc00734 0.13 +0.2
2,847,015 - SMc00734 0.17 +0.5
2,847,015 - SMc00734 0.17 +0.3
2,847,015 - SMc00734 0.17 +0.1
2,847,015 - SMc00734 0.17 +0.5
2,847,015 - SMc00734 0.17 -1.1
2,847,026 + SMc00734 0.19 -0.4
2,847,027 - SMc00734 0.19 +0.0
2,847,045 + SMc00734 0.21 +0.4
2,847,047 + SMc00734 0.21 +1.2
2,847,047 + SMc00734 0.21 +0.1
2,847,048 - SMc00734 0.21 -0.1
2,847,048 - SMc00734 0.21 -0.4
2,847,048 - SMc00734 0.21 -0.2
2,847,048 - SMc00734 0.21 -0.9
2,847,115 + SMc00734 0.29 -1.5
2,847,115 + SMc00734 0.29 -0.4
2,847,353 + SMc00734 0.56 +0.1
2,847,354 - SMc00734 0.56 +0.9
2,847,354 - SMc00734 0.56 +0.6
2,847,354 - SMc00734 0.56 -0.0
2,847,354 - SMc00734 0.56 +0.4
2,847,380 + SMc00734 0.59 -0.8
2,847,431 + SMc00734 0.65 -0.2
2,847,432 - SMc00734 0.65 -0.1
2,847,456 + SMc00734 0.68 -0.8
2,847,456 + SMc00734 0.68 +0.2
2,847,456 + SMc00734 0.68 -0.8
2,847,457 - SMc00734 0.68 -0.5
2,847,457 - SMc00734 0.68 -0.4
2,847,457 - SMc00734 0.68 +0.1
2,847,457 - SMc00734 0.68 -0.0

Or see this region's nucleotide sequence