Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00422 and SMc00423 are separated by 162 nucleotides SMc00423 and SMc00424 overlap by 4 nucleotides SMc00424 and SMc00425 are separated by 134 nucleotides SMc00425 and SMc00461 overlap by 8 nucleotides
SMc00422: SMc00422 - amino acid efflux protein, at 371,474 to 372,091
SMc00422
SMc00423: SMc00423 - amino acid efflux protein, at 372,254 to 372,886
SMc00423
SMc00424: SMc00424 - hypothetical protein, at 372,883 to 373,797
SMc00424
SMc00425: SMc00425 - transcriptional regulator, at 373,932 to 374,369
SMc00425
SMc00461: SMc00461 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 374,362 to 374,844
SMc00461
Position (kb) 372
373
374 Strain fitness (log2 ratio) -1
0
1
2 at 371.934 kb on + strand, within SMc00422 at 371.934 kb on + strand, within SMc00422 at 371.934 kb on + strand, within SMc00422 at 371.935 kb on - strand, within SMc00422 at 371.935 kb on - strand, within SMc00422 at 372.065 kb on - strand at 372.107 kb on + strand at 372.219 kb on + strand at 372.219 kb on + strand at 372.220 kb on - strand at 372.332 kb on + strand, within SMc00423 at 372.333 kb on - strand, within SMc00423 at 372.333 kb on - strand, within SMc00423 at 372.394 kb on - strand, within SMc00423 at 372.413 kb on + strand, within SMc00423 at 372.413 kb on + strand, within SMc00423 at 372.413 kb on + strand, within SMc00423 at 372.414 kb on - strand, within SMc00423 at 372.414 kb on - strand, within SMc00423 at 372.509 kb on + strand, within SMc00423 at 372.558 kb on + strand, within SMc00423 at 372.558 kb on + strand, within SMc00423 at 372.884 kb on + strand at 373.052 kb on + strand, within SMc00424 at 373.116 kb on + strand, within SMc00424 at 373.117 kb on - strand, within SMc00424 at 373.117 kb on - strand, within SMc00424 at 373.118 kb on + strand, within SMc00424 at 373.118 kb on + strand, within SMc00424 at 373.118 kb on + strand, within SMc00424 at 373.118 kb on + strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.119 kb on - strand, within SMc00424 at 373.138 kb on + strand, within SMc00424 at 373.301 kb on + strand, within SMc00424 at 373.301 kb on + strand, within SMc00424 at 373.330 kb on + strand, within SMc00424 at 373.344 kb on - strand, within SMc00424 at 373.358 kb on + strand, within SMc00424 at 373.359 kb on - strand, within SMc00424 at 373.359 kb on - strand, within SMc00424 at 373.359 kb on - strand, within SMc00424 at 373.359 kb on - strand, within SMc00424 at 373.359 kb on - strand, within SMc00424 at 373.359 kb on - strand, within SMc00424 at 373.496 kb on + strand, within SMc00424 at 373.496 kb on + strand, within SMc00424 at 373.496 kb on + strand, within SMc00424 at 373.496 kb on + strand, within SMc00424 at 373.497 kb on - strand, within SMc00424 at 373.497 kb on - strand, within SMc00424 at 373.746 kb on + strand at 373.747 kb on - strand at 373.783 kb on + strand at 373.783 kb on + strand at 373.784 kb on - strand at 374.165 kb on + strand, within SMc00425 at 374.165 kb on + strand, within SMc00425 at 374.165 kb on + strand, within SMc00425 at 374.363 kb on + strand at 374.364 kb on - strand at 374.368 kb on - strand at 374.368 kb on - strand at 374.368 kb on - strand at 374.652 kb on + strand, within SMc00461 at 374.653 kb on - strand, within SMc00461
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 371,934 + SMc00422 0.74 -0.2 371,934 + SMc00422 0.74 -0.8 371,934 + SMc00422 0.74 +0.5 371,935 - SMc00422 0.75 +0.6 371,935 - SMc00422 0.75 -0.1 372,065 - +0.5 372,107 + -0.8 372,219 + -0.4 372,219 + +0.4 372,220 - +0.0 372,332 + SMc00423 0.12 -0.2 372,333 - SMc00423 0.12 +0.2 372,333 - SMc00423 0.12 +0.3 372,394 - SMc00423 0.22 +0.6 372,413 + SMc00423 0.25 -0.4 372,413 + SMc00423 0.25 -0.5 372,413 + SMc00423 0.25 +0.1 372,414 - SMc00423 0.25 -0.2 372,414 - SMc00423 0.25 +0.0 372,509 + SMc00423 0.40 +0.4 372,558 + SMc00423 0.48 +0.5 372,558 + SMc00423 0.48 -0.4 372,884 + +0.0 373,052 + SMc00424 0.18 -0.5 373,116 + SMc00424 0.25 +0.2 373,117 - SMc00424 0.26 -0.2 373,117 - SMc00424 0.26 -0.3 373,118 + SMc00424 0.26 -0.0 373,118 + SMc00424 0.26 +0.1 373,118 + SMc00424 0.26 -0.9 373,118 + SMc00424 0.26 +0.6 373,119 - SMc00424 0.26 -0.3 373,119 - SMc00424 0.26 +0.1 373,119 - SMc00424 0.26 -0.2 373,119 - SMc00424 0.26 +0.0 373,119 - SMc00424 0.26 -0.1 373,119 - SMc00424 0.26 +0.5 373,119 - SMc00424 0.26 -1.0 373,119 - SMc00424 0.26 +0.2 373,119 - SMc00424 0.26 -0.9 373,138 + SMc00424 0.28 -0.2 373,301 + SMc00424 0.46 +0.5 373,301 + SMc00424 0.46 +0.3 373,330 + SMc00424 0.49 +0.0 373,344 - SMc00424 0.50 -0.7 373,358 + SMc00424 0.52 -0.3 373,359 - SMc00424 0.52 +0.1 373,359 - SMc00424 0.52 -0.7 373,359 - SMc00424 0.52 +0.3 373,359 - SMc00424 0.52 -0.1 373,359 - SMc00424 0.52 +0.2 373,359 - SMc00424 0.52 +0.8 373,496 + SMc00424 0.67 +0.0 373,496 + SMc00424 0.67 -0.2 373,496 + SMc00424 0.67 +0.1 373,496 + SMc00424 0.67 -0.2 373,497 - SMc00424 0.67 -0.4 373,497 - SMc00424 0.67 -0.0 373,746 + -0.4 373,747 - +0.0 373,783 + +0.2 373,783 + -0.1 373,784 - -0.9 374,165 + SMc00425 0.53 +1.6 374,165 + SMc00425 0.53 -1.4 374,165 + SMc00425 0.53 +0.2 374,363 + +0.5 374,364 - +0.6 374,368 - +0.5 374,368 - +2.0 374,368 - +0.4 374,652 + SMc00461 0.60 -0.1 374,653 - SMc00461 0.60 -0.3
Or see this region's nucleotide sequence