Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1483 and SMa5009 are separated by 60 nucleotides SMa5009 and SMa1485 overlap by 4 nucleotides
SMa1483: SMa1483 - dehydrogenase, at 815,138 to 817,558
SMa1483
SMa5009: SMa5009 - hypothetical protein, at 817,619 to 817,969
SMa5009
SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255
SMa1485
Position (kb) 817
818 Strain fitness (log2 ratio) -1
0
1
2 at 816.668 kb on - strand, within SMa1483 at 816.794 kb on + strand, within SMa1483 at 816.794 kb on + strand, within SMa1483 at 817.187 kb on + strand, within SMa1483 at 817.188 kb on - strand, within SMa1483 at 817.404 kb on - strand at 817.406 kb on - strand at 817.597 kb on - strand at 817.731 kb on + strand at 817.731 kb on + strand, within SMa5009 at 817.732 kb on - strand, within SMa5009 at 817.761 kb on + strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.765 kb on - strand, within SMa5009 at 817.834 kb on - strand, within SMa5009 at 817.858 kb on - strand, within SMa5009 at 817.858 kb on - strand, within SMa5009 at 817.973 kb on - strand at 818.420 kb on + strand, within SMa1485 at 818.420 kb on + strand, within SMa1485 at 818.753 kb on + strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.940 kb on - strand, within SMa1485
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 816,668 - SMa1483 0.63 -0.3 816,794 + SMa1483 0.68 +0.3 816,794 + SMa1483 0.68 +0.6 817,187 + SMa1483 0.85 +0.3 817,188 - SMa1483 0.85 +1.1 817,404 - -0.3 817,406 - -0.3 817,597 - -0.1 817,731 + +2.6 817,731 + SMa5009 0.32 -0.0 817,732 - SMa5009 0.32 +0.7 817,761 + SMa5009 0.40 +0.9 817,762 - SMa5009 0.41 +0.0 817,762 - SMa5009 0.41 +0.7 817,762 - SMa5009 0.41 +0.1 817,764 + SMa5009 0.41 -0.6 817,764 + SMa5009 0.41 -0.0 817,764 + SMa5009 0.41 +0.0 817,764 + SMa5009 0.41 +2.2 817,764 + SMa5009 0.41 +0.1 817,764 + SMa5009 0.41 +0.5 817,764 + SMa5009 0.41 +1.1 817,765 - SMa5009 0.42 +0.4 817,834 - SMa5009 0.61 +1.7 817,858 - SMa5009 0.68 -0.1 817,858 - SMa5009 0.68 -0.0 817,973 - +0.4 818,420 + SMa1485 0.35 +0.0 818,420 + SMa1485 0.35 -0.6 818,753 + SMa1485 0.61 -0.3 818,754 - SMa1485 0.61 -0.1 818,754 - SMa1485 0.61 +0.2 818,940 - SMa1485 0.76 -0.6
Or see this region's nucleotide sequence