Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1485 and SMa1487 are separated by 228 nucleotides SMa1487 and SMa1488 overlap by 4 nucleotides SMa1488 and SMa1491 overlap by 4 nucleotides SMa1491 and SMa1493 are separated by 159 nucleotides
SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255
SMa1485
SMa1487: SMa1487 - cytochrome C, at 819,484 to 819,852
SMa1487
SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092
SMa1488
SMa1491: SMa1491 - Oxidoreductase, at 822,089 to 822,553
SMa1491
SMa1493: SMa1493 - LysR family transcriptional regulator, at 822,713 to 823,636
SMa1493
Position (kb) 819
820
821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2 at 818.940 kb on - strand, within SMa1485 at 819.108 kb on + strand, within SMa1485 at 819.109 kb on - strand, within SMa1485 at 819.255 kb on + strand at 819.255 kb on + strand at 819.255 kb on + strand at 819.256 kb on - strand at 819.256 kb on - strand at 819.268 kb on + strand at 819.270 kb on + strand at 819.270 kb on + strand at 819.271 kb on - strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.310 kb on - strand at 819.341 kb on + strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.424 kb on - strand at 819.424 kb on - strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.495 kb on + strand at 819.630 kb on + strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.645 kb on - strand, within SMa1487 at 820.054 kb on + strand at 820.084 kb on + strand, within SMa1488 at 820.084 kb on + strand, within SMa1488 at 820.085 kb on - strand, within SMa1488 at 820.559 kb on - strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.593 kb on - strand, within SMa1488 at 820.593 kb on - strand, within SMa1488 at 820.829 kb on - strand, within SMa1488 at 821.035 kb on + strand, within SMa1488 at 821.036 kb on - strand, within SMa1488 at 821.036 kb on - strand, within SMa1488 at 821.099 kb on - strand, within SMa1488 at 821.411 kb on - strand, within SMa1488 at 821.675 kb on + strand, within SMa1488 at 821.689 kb on + strand, within SMa1488 at 821.689 kb on + strand, within SMa1488 at 821.690 kb on - strand, within SMa1488 at 821.690 kb on - strand, within SMa1488 at 821.690 kb on - strand, within SMa1488 at 821.746 kb on + strand, within SMa1488 at 821.746 kb on + strand, within SMa1488 at 821.835 kb on + strand, within SMa1488 at 821.835 kb on + strand, within SMa1488 at 821.836 kb on - strand, within SMa1488 at 821.836 kb on - strand, within SMa1488 at 822.071 kb on + strand at 822.072 kb on - strand at 822.072 kb on - strand at 822.148 kb on + strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.150 kb on + strand, within SMa1491 at 822.150 kb on + strand, within SMa1491 at 822.150 kb on + strand, within SMa1491 at 822.151 kb on - strand, within SMa1491 at 822.221 kb on + strand, within SMa1491 at 822.221 kb on + strand, within SMa1491 at 822.221 kb on + strand, within SMa1491 at 822.222 kb on - strand, within SMa1491 at 822.302 kb on + strand, within SMa1491 at 822.450 kb on + strand, within SMa1491 at 822.450 kb on + strand, within SMa1491 at 822.451 kb on - strand, within SMa1491 at 822.529 kb on + strand at 822.529 kb on + strand at 822.637 kb on + strand at 822.668 kb on - strand at 822.708 kb on - strand at 822.708 kb on - strand at 822.712 kb on + strand at 822.712 kb on + strand at 822.712 kb on + strand at 822.713 kb on - strand at 822.802 kb on - strand at 822.945 kb on + strand, within SMa1493 at 822.946 kb on - strand, within SMa1493 at 822.946 kb on - strand, within SMa1493 at 822.967 kb on + strand, within SMa1493 at 823.071 kb on - strand, within SMa1493
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 818,940 - SMa1485 0.76 -0.6 819,108 + SMa1485 0.89 +0.1 819,109 - SMa1485 0.89 -0.3 819,255 + -0.2 819,255 + +1.0 819,255 + +0.1 819,256 - +0.0 819,256 - +0.1 819,268 + -0.3 819,270 + -0.7 819,270 + -0.5 819,271 - -0.1 819,309 + +0.5 819,309 + -0.4 819,309 + -0.6 819,309 + -0.1 819,310 - -0.1 819,341 + -0.4 819,372 - -0.1 819,372 - -0.4 819,372 - -2.6 819,424 - -0.4 819,424 - -0.3 819,485 + -2.6 819,485 + -0.1 819,485 + +0.2 819,495 + -1.1 819,630 + SMa1487 0.40 -0.4 819,631 - SMa1487 0.40 -0.2 819,631 - SMa1487 0.40 +0.3 819,644 + SMa1487 0.43 +0.6 819,644 + SMa1487 0.43 +0.1 819,645 - SMa1487 0.44 +0.2 820,054 + -0.3 820,084 + SMa1488 0.10 +0.3 820,084 + SMa1488 0.10 +0.1 820,085 - SMa1488 0.11 -0.8 820,559 - SMa1488 0.32 -0.5 820,592 + SMa1488 0.33 +0.9 820,592 + SMa1488 0.33 +0.1 820,592 + SMa1488 0.33 -0.1 820,592 + SMa1488 0.33 +0.0 820,593 - SMa1488 0.33 +1.9 820,593 - SMa1488 0.33 +0.5 820,829 - SMa1488 0.44 +0.3 821,035 + SMa1488 0.53 +0.6 821,036 - SMa1488 0.53 +0.6 821,036 - SMa1488 0.53 +0.8 821,099 - SMa1488 0.56 +0.9 821,411 - SMa1488 0.70 +0.5 821,675 + SMa1488 0.81 +0.9 821,689 + SMa1488 0.82 -0.1 821,689 + SMa1488 0.82 +0.2 821,690 - SMa1488 0.82 -0.3 821,690 - SMa1488 0.82 -2.7 821,690 - SMa1488 0.82 -0.1 821,746 + SMa1488 0.85 +0.2 821,746 + SMa1488 0.85 +0.3 821,835 + SMa1488 0.89 -0.0 821,835 + SMa1488 0.89 +0.5 821,836 - SMa1488 0.89 -0.1 821,836 - SMa1488 0.89 +0.3 822,071 + -0.0 822,072 - -0.9 822,072 - -0.2 822,148 + SMa1491 0.13 +0.1 822,149 - SMa1491 0.13 -0.3 822,149 - SMa1491 0.13 +0.2 822,149 - SMa1491 0.13 +0.8 822,149 - SMa1491 0.13 +0.7 822,149 - SMa1491 0.13 -0.8 822,149 - SMa1491 0.13 +0.4 822,150 + SMa1491 0.13 +0.3 822,150 + SMa1491 0.13 +0.6 822,150 + SMa1491 0.13 +0.3 822,151 - SMa1491 0.13 -0.5 822,221 + SMa1491 0.28 +0.6 822,221 + SMa1491 0.28 +0.0 822,221 + SMa1491 0.28 -0.2 822,222 - SMa1491 0.29 -0.6 822,302 + SMa1491 0.46 +0.1 822,450 + SMa1491 0.78 -0.0 822,450 + SMa1491 0.78 +0.6 822,451 - SMa1491 0.78 -0.1 822,529 + +0.0 822,529 + -0.3 822,637 + +0.4 822,668 - +1.3 822,708 - +0.7 822,708 - +1.2 822,712 + -0.4 822,712 + -1.3 822,712 + +0.1 822,713 - -0.4 822,802 - +0.5 822,945 + SMa1493 0.25 -0.4 822,946 - SMa1493 0.25 +0.7 822,946 - SMa1493 0.25 -0.3 822,967 + SMa1493 0.27 +1.3 823,071 - SMa1493 0.39 -0.0
Or see this region's nucleotide sequence