Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1417 and SMa1418 are separated by 18 nucleotides SMa1418 and SMa1421 are separated by 7 nucleotides SMa1421 and SMa1424 are separated by 10 nucleotides
SMa1417: SMa1417 - Dehydrogenase, Zn-dependent, at 780,875 to 781,900
SMa1417
SMa1418: SMa1418 - ABC transporter permease, at 781,919 to 782,860
SMa1418
SMa1421: SMa1421 - ABC transporter ATP-binding protein, at 782,868 to 784,379
SMa1421
SMa1424: SMa1424 - ABC transporter permease, at 784,390 to 785,355
SMa1424
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 781.921 kb on - strand at 782.240 kb on + strand, within SMa1418 at 782.240 kb on + strand, within SMa1418 at 782.247 kb on + strand, within SMa1418 at 782.532 kb on + strand, within SMa1418 at 782.550 kb on + strand, within SMa1418 at 782.550 kb on + strand, within SMa1418 at 782.689 kb on + strand, within SMa1418 at 782.691 kb on + strand, within SMa1418 at 782.691 kb on + strand, within SMa1418 at 782.692 kb on - strand, within SMa1418 at 782.852 kb on + strand at 782.852 kb on + strand at 782.853 kb on - strand at 782.853 kb on - strand at 782.863 kb on + strand at 782.863 kb on + strand at 782.863 kb on + strand at 782.878 kb on + strand at 782.878 kb on + strand at 782.879 kb on - strand at 782.893 kb on + strand at 782.894 kb on - strand at 782.894 kb on - strand at 782.894 kb on - strand at 782.966 kb on + strand at 782.966 kb on + strand at 783.397 kb on + strand, within SMa1421 at 783.397 kb on + strand, within SMa1421 at 783.398 kb on - strand, within SMa1421 at 783.398 kb on - strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.458 kb on - strand, within SMa1421 at 783.458 kb on - strand, within SMa1421 at 783.542 kb on + strand, within SMa1421 at 783.543 kb on - strand, within SMa1421 at 783.604 kb on + strand, within SMa1421 at 783.606 kb on - strand, within SMa1421 at 783.631 kb on + strand, within SMa1421 at 783.632 kb on - strand, within SMa1421 at 783.632 kb on - strand, within SMa1421 at 783.633 kb on + strand, within SMa1421 at 783.740 kb on - strand, within SMa1421 at 783.740 kb on - strand, within SMa1421 at 783.789 kb on + strand, within SMa1421 at 784.079 kb on - strand, within SMa1421 at 784.228 kb on + strand at 784.229 kb on - strand at 784.237 kb on + strand at 784.237 kb on + strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.375 kb on + strand at 784.375 kb on + strand at 784.376 kb on - strand at 784.376 kb on - strand at 784.776 kb on - strand, within SMa1424 at 784.776 kb on - strand, within SMa1424 at 784.776 kb on - strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.915 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.030 kb on - strand, within SMa1424
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 781,921 - -4.9 782,240 + SMa1418 0.34 +0.4 782,240 + SMa1418 0.34 -0.1 782,247 + SMa1418 0.35 +0.0 782,532 + SMa1418 0.65 -0.5 782,550 + SMa1418 0.67 -0.2 782,550 + SMa1418 0.67 +0.6 782,689 + SMa1418 0.82 +0.6 782,691 + SMa1418 0.82 +0.1 782,691 + SMa1418 0.82 -0.1 782,692 - SMa1418 0.82 +0.9 782,852 + +0.4 782,852 + -0.5 782,853 - +0.0 782,853 - +0.1 782,863 + +0.1 782,863 + -0.1 782,863 + -1.0 782,878 + +0.3 782,878 + +0.3 782,879 - -0.2 782,893 + +0.4 782,894 - -0.4 782,894 - -0.5 782,894 - +1.0 782,966 + +0.2 782,966 + +0.2 783,397 + SMa1421 0.35 +0.8 783,397 + SMa1421 0.35 -0.2 783,398 - SMa1421 0.35 -0.2 783,398 - SMa1421 0.35 -0.4 783,457 + SMa1421 0.39 +0.6 783,457 + SMa1421 0.39 -0.6 783,457 + SMa1421 0.39 +0.2 783,458 - SMa1421 0.39 -0.4 783,458 - SMa1421 0.39 -0.0 783,542 + SMa1421 0.45 +0.7 783,543 - SMa1421 0.45 -0.2 783,604 + SMa1421 0.49 -0.3 783,606 - SMa1421 0.49 -0.5 783,631 + SMa1421 0.50 -0.0 783,632 - SMa1421 0.51 -0.3 783,632 - SMa1421 0.51 +0.6 783,633 + SMa1421 0.51 +0.1 783,740 - SMa1421 0.58 +0.7 783,740 - SMa1421 0.58 -0.6 783,789 + SMa1421 0.61 -0.4 784,079 - SMa1421 0.80 +0.3 784,228 + +0.2 784,229 - +0.2 784,237 + -0.6 784,237 + +0.5 784,238 - -0.1 784,238 - +0.3 784,238 - +0.9 784,238 - -0.6 784,238 - -0.1 784,375 + +0.0 784,375 + -0.7 784,376 - -2.6 784,376 - +2.6 784,776 - SMa1424 0.40 -0.4 784,776 - SMa1424 0.40 +0.1 784,776 - SMa1424 0.40 +0.1 784,844 + SMa1424 0.47 -0.3 784,844 + SMa1424 0.47 +0.2 784,844 + SMa1424 0.47 +0.1 784,915 + SMa1424 0.54 +0.0 785,029 + SMa1424 0.66 -0.1 785,029 + SMa1424 0.66 -0.3 785,029 + SMa1424 0.66 +0.1 785,030 - SMa1424 0.66 -0.7 785,030 - SMa1424 0.66 +0.1 785,030 - SMa1424 0.66 +0.2
Or see this region's nucleotide sequence