Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0799 and SMa0800 are separated by 92 nucleotides SMa0800 and SMa0802 are separated by 1 nucleotides SMa0802 and SMa0803 overlap by 4 nucleotides
SMa0799: SMa0799 - ABC transporter substrate-binding protein, at 435,861 to 436,871
SMa0799
SMa0800: SMa0800 - ABC transporter permease, at 436,964 to 437,839
SMa0800
SMa0802: SMa0802 - ABC transporter permease, at 437,841 to 438,641
SMa0802
SMa0803: SMa0803 - ABC transporter ATP-binding protein, at 438,638 to 439,717
SMa0803
Position (kb) 436
437
438 Strain fitness (log2 ratio) -1
0
1
2 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.207 kb on - strand, within SMa0799 at 436.225 kb on - strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.329 kb on + strand, within SMa0799 at 436.330 kb on - strand, within SMa0799 at 436.381 kb on + strand, within SMa0799 at 436.443 kb on - strand, within SMa0799 at 436.517 kb on + strand, within SMa0799 at 436.657 kb on + strand, within SMa0799 at 436.968 kb on + strand at 436.969 kb on - strand at 437.000 kb on + strand at 437.056 kb on - strand, within SMa0800 at 437.101 kb on - strand, within SMa0800 at 437.142 kb on - strand, within SMa0800 at 437.142 kb on - strand, within SMa0800 at 437.340 kb on - strand, within SMa0800 at 437.462 kb on + strand, within SMa0800 at 437.462 kb on + strand, within SMa0800 at 437.462 kb on + strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.495 kb on + strand, within SMa0800 at 437.495 kb on + strand, within SMa0800 at 437.496 kb on - strand, within SMa0800 at 437.496 kb on - strand, within SMa0800 at 437.678 kb on - strand, within SMa0800 at 437.789 kb on + strand at 437.932 kb on + strand, within SMa0802 at 437.933 kb on - strand, within SMa0802 at 437.933 kb on - strand, within SMa0802 at 437.938 kb on + strand, within SMa0802 at 437.945 kb on - strand, within SMa0802 at 438.006 kb on + strand, within SMa0802 at 438.016 kb on + strand, within SMa0802 at 438.016 kb on + strand, within SMa0802 at 438.017 kb on - strand, within SMa0802 at 438.077 kb on + strand, within SMa0802 at 438.200 kb on - strand at 438.213 kb on + strand, within SMa0802 at 438.213 kb on + strand, within SMa0802 at 438.214 kb on - strand, within SMa0802 at 438.643 kb on + strand at 438.644 kb on - strand at 438.680 kb on + strand at 438.710 kb on - strand at 438.782 kb on + strand, within SMa0803 at 438.782 kb on + strand, within SMa0803 at 438.782 kb on + strand, within SMa0803 at 438.828 kb on + strand, within SMa0803 at 438.828 kb on + strand, within SMa0803 at 438.829 kb on - strand, within SMa0803 at 438.829 kb on - strand, within SMa0803
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 436,062 - SMa0799 0.20 -0.0 436,062 - SMa0799 0.20 +0.1 436,062 - SMa0799 0.20 +0.1 436,062 - SMa0799 0.20 -0.3 436,207 - SMa0799 0.34 +0.8 436,225 - SMa0799 0.36 +0.4 436,227 + SMa0799 0.36 -0.3 436,227 + SMa0799 0.36 +0.2 436,227 + SMa0799 0.36 -0.6 436,228 - SMa0799 0.36 -0.2 436,228 - SMa0799 0.36 -1.5 436,329 + SMa0799 0.46 -0.6 436,330 - SMa0799 0.46 +0.7 436,381 + SMa0799 0.51 +0.9 436,443 - SMa0799 0.58 -0.7 436,517 + SMa0799 0.65 +0.2 436,657 + SMa0799 0.79 -0.1 436,968 + +0.4 436,969 - +1.0 437,000 + +0.2 437,056 - SMa0800 0.11 +0.3 437,101 - SMa0800 0.16 +1.1 437,142 - SMa0800 0.20 -0.1 437,142 - SMa0800 0.20 +0.3 437,340 - SMa0800 0.43 +0.2 437,462 + SMa0800 0.57 -0.4 437,462 + SMa0800 0.57 -0.6 437,462 + SMa0800 0.57 +0.2 437,463 - SMa0800 0.57 -1.0 437,463 - SMa0800 0.57 -0.1 437,463 - SMa0800 0.57 -1.0 437,463 - SMa0800 0.57 +0.2 437,463 - SMa0800 0.57 -0.0 437,463 - SMa0800 0.57 -0.1 437,495 + SMa0800 0.61 -0.1 437,495 + SMa0800 0.61 +0.5 437,496 - SMa0800 0.61 +0.4 437,496 - SMa0800 0.61 +1.4 437,678 - SMa0800 0.82 -0.5 437,789 + +0.7 437,932 + SMa0802 0.11 +0.2 437,933 - SMa0802 0.11 +0.2 437,933 - SMa0802 0.11 +0.3 437,938 + SMa0802 0.12 -0.9 437,945 - SMa0802 0.13 -0.3 438,006 + SMa0802 0.21 +0.4 438,016 + SMa0802 0.22 +0.4 438,016 + SMa0802 0.22 -0.1 438,017 - SMa0802 0.22 +0.1 438,077 + SMa0802 0.29 -0.2 438,200 - +1.9 438,213 + SMa0802 0.46 +0.0 438,213 + SMa0802 0.46 +0.9 438,214 - SMa0802 0.47 +0.2 438,643 + +0.2 438,644 - +1.6 438,680 + +0.2 438,710 - -0.1 438,782 + SMa0803 0.13 -0.2 438,782 + SMa0803 0.13 +0.1 438,782 + SMa0803 0.13 +0.5 438,828 + SMa0803 0.18 -0.1 438,828 + SMa0803 0.18 -0.1 438,829 - SMa0803 0.18 +1.9 438,829 - SMa0803 0.18 -0.2
Or see this region's nucleotide sequence