Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0316 and SMa0319 are separated by 503 nucleotides SMa0319 and SMa0320 are separated by 144 nucleotides SMa0320 and SMa0322 are separated by 57 nucleotides
SMa0316: SMa0316 - hypothetical protein, at 176,207 to 177,469
SMa0316
SMa0319: SMa0319 - AraC family transcriptional regulator, at 177,973 to 178,974
SMa0319
SMa0320: SMa0320 - short chain alcohol dehydrogenase-related dehydrogenase, at 179,119 to 179,868
SMa0320
SMa0322: SMa0322 - hypothetical protein, at 179,926 to 180,474
SMa0322
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 177.145 kb on + strand, within SMa0316 at 177.290 kb on - strand, within SMa0316 at 177.395 kb on - strand at 177.454 kb on + strand at 177.455 kb on - strand at 177.705 kb on - strand at 177.772 kb on + strand at 177.777 kb on - strand at 177.777 kb on - strand at 177.777 kb on - strand at 177.833 kb on + strand at 177.910 kb on + strand at 177.911 kb on - strand at 177.930 kb on + strand at 177.958 kb on - strand at 178.039 kb on - strand at 178.077 kb on + strand, within SMa0319 at 178.120 kb on + strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.124 kb on + strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.412 kb on - strand, within SMa0319 at 178.444 kb on + strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.454 kb on + strand, within SMa0319 at 178.455 kb on - strand, within SMa0319 at 178.749 kb on + strand, within SMa0319 at 178.811 kb on - strand, within SMa0319 at 178.811 kb on - strand, within SMa0319 at 178.869 kb on + strand, within SMa0319 at 178.869 kb on + strand, within SMa0319 at 178.870 kb on - strand, within SMa0319 at 179.532 kb on + strand, within SMa0320 at 179.532 kb on + strand, within SMa0320 at 179.532 kb on + strand, within SMa0320 at 179.532 kb on + strand, within SMa0320 at 179.533 kb on - strand, within SMa0320 at 179.853 kb on + strand at 179.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 177,145 + SMa0316 0.74 +1.3 177,290 - SMa0316 0.86 +0.3 177,395 - -0.4 177,454 + +0.5 177,455 - +0.4 177,705 - -0.6 177,772 + -0.3 177,777 - -0.0 177,777 - +0.3 177,777 - -0.3 177,833 + +0.2 177,910 + +1.0 177,911 - +0.7 177,930 + -0.8 177,958 - +0.2 178,039 - +0.5 178,077 + SMa0319 0.10 +0.2 178,120 + SMa0319 0.15 +0.8 178,121 - SMa0319 0.15 +0.1 178,121 - SMa0319 0.15 -0.2 178,121 - SMa0319 0.15 +0.9 178,124 + SMa0319 0.15 +0.9 178,358 - SMa0319 0.38 +0.1 178,358 - SMa0319 0.38 +0.4 178,412 - SMa0319 0.44 +0.1 178,444 + SMa0319 0.47 +0.8 178,445 - SMa0319 0.47 -0.1 178,445 - SMa0319 0.47 +0.6 178,454 + SMa0319 0.48 +1.1 178,455 - SMa0319 0.48 +0.7 178,749 + SMa0319 0.77 +1.3 178,811 - SMa0319 0.84 +0.6 178,811 - SMa0319 0.84 +0.1 178,869 + SMa0319 0.89 -0.1 178,869 + SMa0319 0.89 +0.3 178,870 - SMa0319 0.90 +0.2 179,532 + SMa0320 0.55 +0.3 179,532 + SMa0320 0.55 +0.3 179,532 + SMa0320 0.55 -0.5 179,532 + SMa0320 0.55 -0.4 179,533 - SMa0320 0.55 +0.7 179,853 + +0.1 179,853 - -2.1
Or see this region's nucleotide sequence