Strain Fitness in Sinorhizobium meliloti 1021 around SMa0199

Experiment: Uridine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa0197 and SMa0198 overlap by 4 nucleotidesSMa0198 and SMa0199 overlap by 4 nucleotidesSMa0199 and SMa0203 are separated by 58 nucleotides SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825 SMa0197 SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769 SMa0198 SMa0199: SMa0199 - ABC transporter ATP-binding protein, at 109,766 to 111,229 SMa0199 SMa0203: SMa0203 - ABC transporter substrate-binding protein, at 111,288 to 112,304 SMa0203 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -1 0 1at 108.813 kb on + strandat 109.116 kb on + strand, within SMa0198at 109.117 kb on - strand, within SMa0198at 109.145 kb on - strand, within SMa0198at 109.272 kb on + strand, within SMa0198at 109.273 kb on - strand, within SMa0198at 109.465 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.795 kb on + strandat 109.795 kb on + strandat 109.796 kb on - strandat 109.796 kb on - strandat 109.796 kb on - strandat 109.796 kb on - strandat 109.860 kb on + strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.902 kb on + strandat 109.950 kb on + strand, within SMa0199at 109.950 kb on + strand, within SMa0199at 109.951 kb on - strand, within SMa0199at 110.134 kb on + strand, within SMa0199at 110.396 kb on - strand, within SMa0199at 110.475 kb on - strand, within SMa0199at 110.564 kb on - strand, within SMa0199at 110.596 kb on + strand, within SMa0199at 110.596 kb on + strand, within SMa0199at 110.597 kb on - strand, within SMa0199at 110.894 kb on + strand, within SMa0199at 110.992 kb on - strand, within SMa0199at 111.088 kb on + strandat 111.088 kb on + strandat 111.088 kb on + strandat 111.088 kb on + strandat 111.089 kb on - strandat 111.204 kb on - strandat 111.214 kb on + strandat 111.215 kb on - strandat 111.259 kb on + strandat 111.363 kb on - strandat 111.396 kb on + strand, within SMa0203at 111.397 kb on - strand, within SMa0203at 111.430 kb on - strand, within SMa0203at 111.430 kb on - strand, within SMa0203at 111.625 kb on + strand, within SMa0203at 111.831 kb on + strand, within SMa0203at 111.831 kb on + strand, within SMa0203at 111.865 kb on + strand, within SMa0203at 112.034 kb on - strand, within SMa0203at 112.034 kb on - strand, within SMa0203at 112.195 kb on + strand, within SMa0203at 112.195 kb on + strand, within SMa0203at 112.195 kb on + strand, within SMa0203at 112.196 kb on - strand, within SMa0203at 112.196 kb on - strand, within SMa0203at 112.196 kb on - strand, within SMa0203at 112.196 kb on - strand, within SMa0203at 112.196 kb on - strand, within SMa0203at 112.196 kb on - strand, within SMa0203

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
remove
108,813 + +0.7
109,116 + SMa0198 0.31 -0.4
109,117 - SMa0198 0.31 -0.0
109,145 - SMa0198 0.34 +0.0
109,272 + SMa0198 0.47 -0.2
109,273 - SMa0198 0.48 +0.1
109,465 + SMa0198 0.68 +0.4
109,663 + SMa0198 0.89 -0.5
109,663 + SMa0198 0.89 -1.2
109,663 + SMa0198 0.89 +0.4
109,663 + SMa0198 0.89 -0.3
109,663 + SMa0198 0.89 -0.4
109,663 + SMa0198 0.89 -0.6
109,663 + SMa0198 0.89 -0.5
109,664 - SMa0198 0.89 +0.1
109,664 - SMa0198 0.89 -0.5
109,664 - SMa0198 0.89 +0.8
109,664 - SMa0198 0.89 +0.3
109,795 + -1.3
109,795 + -0.8
109,796 - -0.1
109,796 - +0.1
109,796 - +0.2
109,796 - +0.1
109,860 + +0.9
109,861 - +0.2
109,861 - +0.7
109,861 - +0.2
109,861 - +0.3
109,861 - +0.3
109,902 + +0.0
109,950 + SMa0199 0.13 -0.2
109,950 + SMa0199 0.13 +0.2
109,951 - SMa0199 0.13 +0.2
110,134 + SMa0199 0.25 -0.6
110,396 - SMa0199 0.43 +0.4
110,475 - SMa0199 0.48 -0.5
110,564 - SMa0199 0.55 -0.1
110,596 + SMa0199 0.57 -0.2
110,596 + SMa0199 0.57 -1.3
110,597 - SMa0199 0.57 +0.0
110,894 + SMa0199 0.77 +0.1
110,992 - SMa0199 0.84 +0.5
111,088 + -0.1
111,088 + -1.2
111,088 + -0.2
111,088 + -0.4
111,089 - +0.6
111,204 - -0.1
111,214 + -0.1
111,215 - -0.0
111,259 + +1.1
111,363 - -0.9
111,396 + SMa0203 0.11 -0.0
111,397 - SMa0203 0.11 -1.1
111,430 - SMa0203 0.14 -0.8
111,430 - SMa0203 0.14 +0.7
111,625 + SMa0203 0.33 -0.7
111,831 + SMa0203 0.53 +0.2
111,831 + SMa0203 0.53 -0.1
111,865 + SMa0203 0.57 +1.2
112,034 - SMa0203 0.73 +0.6
112,034 - SMa0203 0.73 +0.1
112,195 + SMa0203 0.89 -0.1
112,195 + SMa0203 0.89 -1.3
112,195 + SMa0203 0.89 -0.2
112,196 - SMa0203 0.89 -0.1
112,196 - SMa0203 0.89 +0.2
112,196 - SMa0203 0.89 -0.7
112,196 - SMa0203 0.89 -0.5
112,196 - SMa0203 0.89 -0.2
112,196 - SMa0203 0.89 -1.4

Or see this region's nucleotide sequence