Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21592 and SM_b21593 overlap by 4 nucleotides SM_b21593 and SM_b21594 overlap by 4 nucleotides
SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553
_b21592
SM_b21593: SM_b21593 - sugar uptake ABC transporter permease, at 1,133,550 to 1,134,377
_b21593
SM_b21594: SM_b21594 - sugar uptake ABC transporter permease, at 1,134,374 to 1,135,276
_b21594
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1132.619 kb on - strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.662 kb on + strand, within SM_b21592 at 1132.886 kb on + strand, within SM_b21592 at 1132.887 kb on - strand, within SM_b21592 at 1132.985 kb on + strand, within SM_b21592 at 1132.986 kb on - strand, within SM_b21592 at 1132.986 kb on - strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.038 kb on - strand, within SM_b21592 at 1133.246 kb on - strand, within SM_b21592 at 1133.258 kb on + strand, within SM_b21592 at 1133.259 kb on - strand, within SM_b21592 at 1133.283 kb on + strand, within SM_b21592 at 1133.284 kb on - strand, within SM_b21592 at 1133.292 kb on - strand, within SM_b21592 at 1133.300 kb on + strand, within SM_b21592 at 1133.300 kb on + strand, within SM_b21592 at 1133.301 kb on - strand, within SM_b21592 at 1133.301 kb on - strand, within SM_b21592 at 1133.473 kb on + strand at 1133.504 kb on + strand at 1133.514 kb on - strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.630 kb on - strand at 1133.630 kb on - strand at 1133.642 kb on - strand, within SM_b21593 at 1133.651 kb on + strand, within SM_b21593 at 1133.652 kb on - strand, within SM_b21593 at 1133.670 kb on - strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.104 kb on - strand, within SM_b21593 at 1134.175 kb on + strand, within SM_b21593 at 1134.211 kb on + strand, within SM_b21593 at 1134.212 kb on - strand, within SM_b21593 at 1134.287 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.301 kb on + strand at 1134.302 kb on - strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.408 kb on + strand at 1134.408 kb on + strand at 1134.409 kb on - strand at 1134.477 kb on + strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.508 kb on - strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.690 kb on + strand, within SM_b21594 at 1134.690 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.998 kb on + strand, within SM_b21594 at 1134.998 kb on + strand, within SM_b21594 at 1135.088 kb on - strand, within SM_b21594 at 1135.170 kb on + strand, within SM_b21594 at 1135.170 kb on + strand, within SM_b21594 at 1135.171 kb on - strand, within SM_b21594 at 1135.171 kb on - strand, within SM_b21594 at 1135.252 kb on + strand at 1135.262 kb on + strand at 1135.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,132,619 - SM_b21592 0.19 -0.1 1,132,622 + SM_b21592 0.19 +0.8 1,132,622 + SM_b21592 0.19 +1.1 1,132,622 + SM_b21592 0.19 -0.1 1,132,623 - SM_b21592 0.19 -0.0 1,132,623 - SM_b21592 0.19 +0.4 1,132,623 - SM_b21592 0.19 +1.1 1,132,662 + SM_b21592 0.23 -1.1 1,132,886 + SM_b21592 0.42 -0.1 1,132,887 - SM_b21592 0.42 -0.1 1,132,985 + SM_b21592 0.51 -0.9 1,132,986 - SM_b21592 0.51 -0.6 1,132,986 - SM_b21592 0.51 -0.1 1,133,037 + SM_b21592 0.55 -0.0 1,133,037 + SM_b21592 0.55 +1.4 1,133,037 + SM_b21592 0.55 +0.0 1,133,038 - SM_b21592 0.55 -0.4 1,133,246 - SM_b21592 0.73 +0.3 1,133,258 + SM_b21592 0.74 -0.1 1,133,259 - SM_b21592 0.74 -0.4 1,133,283 + SM_b21592 0.76 +0.7 1,133,284 - SM_b21592 0.77 -0.2 1,133,292 - SM_b21592 0.77 +1.8 1,133,300 + SM_b21592 0.78 +0.0 1,133,300 + SM_b21592 0.78 +0.6 1,133,301 - SM_b21592 0.78 +0.1 1,133,301 - SM_b21592 0.78 -2.0 1,133,473 + -0.4 1,133,504 + +0.2 1,133,514 - -1.3 1,133,629 + -0.4 1,133,629 + +0.8 1,133,629 + -0.3 1,133,630 - -0.2 1,133,630 - +0.7 1,133,642 - SM_b21593 0.11 +0.6 1,133,651 + SM_b21593 0.12 -0.1 1,133,652 - SM_b21593 0.12 +0.0 1,133,670 - SM_b21593 0.14 +0.6 1,134,103 + SM_b21593 0.67 +1.1 1,134,103 + SM_b21593 0.67 +0.2 1,134,104 - SM_b21593 0.67 +0.2 1,134,175 + SM_b21593 0.75 +0.2 1,134,211 + SM_b21593 0.80 +0.0 1,134,212 - SM_b21593 0.80 +1.4 1,134,287 + SM_b21593 0.89 +0.7 1,134,292 + SM_b21593 0.90 +0.7 1,134,292 + SM_b21593 0.90 +0.0 1,134,301 + +0.1 1,134,302 - +0.6 1,134,316 + -0.2 1,134,316 + -2.0 1,134,316 + -0.2 1,134,316 + -1.4 1,134,317 - -0.9 1,134,317 - -0.8 1,134,317 - +0.6 1,134,408 + +0.3 1,134,408 + +0.5 1,134,409 - -0.7 1,134,477 + SM_b21594 0.11 -0.4 1,134,478 - SM_b21594 0.12 -0.1 1,134,478 - SM_b21594 0.12 -0.2 1,134,508 - SM_b21594 0.15 -0.0 1,134,526 + SM_b21594 0.17 -0.1 1,134,526 + SM_b21594 0.17 +0.3 1,134,527 - SM_b21594 0.17 -1.0 1,134,527 - SM_b21594 0.17 -0.3 1,134,527 - SM_b21594 0.17 -0.8 1,134,690 + SM_b21594 0.35 +0.0 1,134,690 + SM_b21594 0.35 -0.8 1,134,760 + SM_b21594 0.43 -0.0 1,134,760 + SM_b21594 0.43 +0.1 1,134,760 + SM_b21594 0.43 -0.5 1,134,998 + SM_b21594 0.69 -0.2 1,134,998 + SM_b21594 0.69 -0.0 1,135,088 - SM_b21594 0.79 +0.4 1,135,170 + SM_b21594 0.88 +0.5 1,135,170 + SM_b21594 0.88 -0.4 1,135,171 - SM_b21594 0.88 -0.0 1,135,171 - SM_b21594 0.88 +0.9 1,135,252 + -0.4 1,135,262 + +0.1 1,135,263 - -0.0
Or see this region's nucleotide sequence