Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21284 and SM_b21285 are separated by 167 nucleotides SM_b21285 and SM_b21286 are separated by 5 nucleotides SM_b21286 and SM_b21287 are separated by 13 nucleotides
SM_b21284: SM_b21284 - uricase, at 858,904 to 860,319
_b21284
SM_b21285: SM_b21285 - transthyretin-like protein, at 860,487 to 860,858
_b21285
SM_b21286: SM_b21286 - xanthine dehydrogenase, at 860,864 to 862,345
_b21286
SM_b21287: SM_b21287 - xanthine dehydrogenase, at 862,359 to 864,692
_b21287
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -1
0
1 at 860.045 kb on - strand, within SM_b21284 at 860.105 kb on + strand, within SM_b21284 at 860.226 kb on - strand at 860.274 kb on + strand at 860.319 kb on + strand at 860.320 kb on - strand at 860.320 kb on - strand at 860.360 kb on + strand at 860.688 kb on + strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.803 kb on - strand, within SM_b21285 at 860.803 kb on - strand, within SM_b21285 at 860.829 kb on + strand at 860.835 kb on + strand at 860.836 kb on - strand at 860.844 kb on + strand at 860.845 kb on - strand at 860.845 kb on - strand at 861.240 kb on - strand, within SM_b21286 at 861.324 kb on - strand, within SM_b21286 at 861.681 kb on - strand, within SM_b21286 at 861.787 kb on + strand, within SM_b21286 at 861.993 kb on - strand, within SM_b21286 at 862.021 kb on + strand, within SM_b21286 at 862.022 kb on - strand, within SM_b21286 at 862.022 kb on - strand, within SM_b21286 at 862.340 kb on - strand at 862.340 kb on - strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.344 kb on - strand at 862.344 kb on - strand at 862.455 kb on + strand at 862.456 kb on - strand at 862.457 kb on + strand at 862.457 kb on + strand at 862.457 kb on + strand at 862.457 kb on + strand at 862.458 kb on - strand at 862.458 kb on - strand at 862.459 kb on + strand at 862.459 kb on + strand at 862.460 kb on - strand at 862.466 kb on + strand at 862.467 kb on - strand at 862.497 kb on + strand at 862.600 kb on + strand, within SM_b21287 at 862.600 kb on + strand, within SM_b21287 at 862.600 kb on + strand, within SM_b21287 at 862.741 kb on + strand, within SM_b21287 at 862.741 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.224 kb on - strand, within SM_b21287
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 860,045 - SM_b21284 0.81 -0.6 860,105 + SM_b21284 0.85 -1.1 860,226 - +1.5 860,274 + +0.3 860,319 + +0.4 860,320 - -0.1 860,320 - -0.3 860,360 + -0.9 860,688 + SM_b21285 0.54 -0.6 860,689 - SM_b21285 0.54 +0.2 860,689 - SM_b21285 0.54 -0.2 860,689 - SM_b21285 0.54 -0.7 860,802 + SM_b21285 0.85 -0.2 860,802 + SM_b21285 0.85 +0.7 860,802 + SM_b21285 0.85 -0.3 860,803 - SM_b21285 0.85 -0.3 860,803 - SM_b21285 0.85 +0.1 860,829 + -0.3 860,835 + -0.9 860,836 - +1.1 860,844 + +0.2 860,845 - +0.2 860,845 - -0.4 861,240 - SM_b21286 0.25 -1.2 861,324 - SM_b21286 0.31 -0.2 861,681 - SM_b21286 0.55 +0.1 861,787 + SM_b21286 0.62 +0.4 861,993 - SM_b21286 0.76 +0.9 862,021 + SM_b21286 0.78 -0.4 862,022 - SM_b21286 0.78 +0.3 862,022 - SM_b21286 0.78 +0.1 862,340 - +0.8 862,340 - -0.9 862,343 + -0.1 862,343 + +1.1 862,343 + +0.2 862,343 + +0.4 862,343 + -0.4 862,344 - +0.2 862,344 - -1.6 862,455 + -0.9 862,456 - +0.3 862,457 + +1.1 862,457 + -0.3 862,457 + +0.5 862,457 + +0.3 862,458 - -0.0 862,458 - +0.3 862,459 + +0.2 862,459 + +0.9 862,460 - +0.1 862,466 + -0.3 862,467 - +0.3 862,497 + -0.2 862,600 + SM_b21287 0.10 -0.4 862,600 + SM_b21287 0.10 +0.5 862,600 + SM_b21287 0.10 +0.9 862,741 + SM_b21287 0.16 -0.2 862,741 + SM_b21287 0.16 +1.0 863,223 + SM_b21287 0.37 -0.1 863,223 + SM_b21287 0.37 +0.4 863,223 + SM_b21287 0.37 +0.5 863,223 + SM_b21287 0.37 +0.1 863,224 - SM_b21287 0.37 -0.0
Or see this region's nucleotide sequence