Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21225 and SM_b21226 are separated by 46 nucleotides SM_b21226 and SM_b21227 overlap by 4 nucleotides SM_b21227 and SM_b21228 are separated by 5 nucleotides
SM_b21225: SM_b21225 - inositol monophosphatase, at 789,434 to 790,273
_b21225
SM_b21226: SM_b21226 - hypothetical protein, at 790,320 to 791,060
_b21226
SM_b21227: SM_b21227 - carbamoyl phosphate synthase-like protein, at 791,057 to 792,049
_b21227
SM_b21228: SM_b21228 - nucleotide sugar epimerase dehydratase, at 792,055 to 792,990
_b21228
Position (kb) 791
792
793 Strain fitness (log2 ratio) -1
0
1 at 790.259 kb on + strand at 790.260 kb on - strand at 790.339 kb on + strand at 790.339 kb on + strand at 790.340 kb on - strand at 790.340 kb on - strand at 790.507 kb on + strand, within SM_b21226 at 790.507 kb on + strand, within SM_b21226 at 790.508 kb on - strand, within SM_b21226 at 790.578 kb on - strand, within SM_b21226 at 790.578 kb on - strand, within SM_b21226 at 790.588 kb on - strand, within SM_b21226 at 790.857 kb on + strand, within SM_b21226 at 791.033 kb on - strand at 791.033 kb on - strand at 791.068 kb on + strand at 791.068 kb on + strand at 791.069 kb on - strand at 791.143 kb on - strand at 791.180 kb on + strand, within SM_b21227 at 791.198 kb on + strand, within SM_b21227 at 791.199 kb on - strand, within SM_b21227 at 791.229 kb on - strand, within SM_b21227 at 791.342 kb on + strand, within SM_b21227 at 791.343 kb on - strand at 791.439 kb on - strand, within SM_b21227 at 791.633 kb on + strand, within SM_b21227 at 791.633 kb on + strand, within SM_b21227 at 791.710 kb on + strand, within SM_b21227 at 791.710 kb on + strand, within SM_b21227 at 791.711 kb on - strand, within SM_b21227 at 791.714 kb on + strand, within SM_b21227 at 791.714 kb on + strand, within SM_b21227 at 791.715 kb on - strand, within SM_b21227 at 791.715 kb on - strand, within SM_b21227 at 791.786 kb on + strand, within SM_b21227 at 791.787 kb on - strand, within SM_b21227 at 791.787 kb on - strand, within SM_b21227 at 791.970 kb on + strand at 791.971 kb on - strand at 791.971 kb on - strand at 792.127 kb on + strand at 792.128 kb on - strand at 792.266 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.466 kb on + strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.470 kb on - strand, within SM_b21228 at 792.562 kb on + strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.655 kb on + strand, within SM_b21228 at 792.655 kb on + strand, within SM_b21228 at 792.668 kb on + strand, within SM_b21228 at 792.668 kb on + strand, within SM_b21228 at 792.673 kb on + strand, within SM_b21228 at 792.674 kb on - strand, within SM_b21228 at 792.731 kb on + strand, within SM_b21228 at 792.901 kb on + strand at 792.988 kb on + strand at 792.988 kb on + strand at 792.988 kb on + strand at 792.989 kb on - strand at 793.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 790,259 + +0.0 790,260 - +0.1 790,339 + +0.7 790,339 + -0.0 790,340 - +0.0 790,340 - -0.4 790,507 + SM_b21226 0.25 +0.3 790,507 + SM_b21226 0.25 -0.1 790,508 - SM_b21226 0.25 +0.5 790,578 - SM_b21226 0.35 -0.2 790,578 - SM_b21226 0.35 +0.5 790,588 - SM_b21226 0.36 +0.3 790,857 + SM_b21226 0.72 -0.5 791,033 - +0.0 791,033 - +0.6 791,068 + -0.2 791,068 + +0.2 791,069 - +0.3 791,143 - -0.2 791,180 + SM_b21227 0.12 -0.1 791,198 + SM_b21227 0.14 +1.6 791,199 - SM_b21227 0.14 +0.7 791,229 - SM_b21227 0.17 +0.2 791,342 + SM_b21227 0.29 +0.0 791,343 - +0.8 791,439 - SM_b21227 0.38 +0.6 791,633 + SM_b21227 0.58 +0.2 791,633 + SM_b21227 0.58 +0.1 791,710 + SM_b21227 0.66 +0.6 791,710 + SM_b21227 0.66 +0.1 791,711 - SM_b21227 0.66 +0.1 791,714 + SM_b21227 0.66 -0.0 791,714 + SM_b21227 0.66 +0.6 791,715 - SM_b21227 0.66 -0.0 791,715 - SM_b21227 0.66 +0.0 791,786 + SM_b21227 0.73 -1.3 791,787 - SM_b21227 0.74 -0.2 791,787 - SM_b21227 0.74 -0.4 791,970 + -0.0 791,971 - +0.1 791,971 - +1.4 792,127 + +0.2 792,128 - +0.2 792,266 - SM_b21228 0.23 +0.2 792,404 - SM_b21228 0.37 +0.1 792,404 - SM_b21228 0.37 +0.8 792,404 - SM_b21228 0.37 +0.0 792,466 + SM_b21228 0.44 +0.4 792,467 - SM_b21228 0.44 +0.6 792,467 - SM_b21228 0.44 +1.2 792,467 - SM_b21228 0.44 -0.2 792,470 - SM_b21228 0.44 -0.1 792,562 + SM_b21228 0.54 +1.1 792,563 - SM_b21228 0.54 -0.1 792,563 - SM_b21228 0.54 +0.3 792,563 - SM_b21228 0.54 +0.2 792,563 - SM_b21228 0.54 -0.3 792,563 - SM_b21228 0.54 -0.3 792,655 + SM_b21228 0.64 +0.1 792,655 + SM_b21228 0.64 -0.0 792,668 + SM_b21228 0.65 +0.5 792,668 + SM_b21228 0.65 -0.4 792,673 + SM_b21228 0.66 -0.6 792,674 - SM_b21228 0.66 +0.4 792,731 + SM_b21228 0.72 +0.4 792,901 + +0.1 792,988 + -0.0 792,988 + +0.4 792,988 + -0.3 792,989 - -0.0 793,039 + +0.1
Or see this region's nucleotide sequence