Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21202

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21201 and SM_b21202 are separated by 272 nucleotidesSM_b21202 and SM_b21203 are separated by 100 nucleotidesSM_b21203 and SM_b21666 are separated by 60 nucleotides SM_b21201: SM_b21201 - two-component sensor histidine kinase, at 951,860 to 953,680 _b21201 SM_b21202: SM_b21202 - hypothetical protein, at 953,953 to 954,885 _b21202 SM_b21203: SM_b21203 - esteraselipase/thioesterase, at 954,986 to 955,588 _b21203 SM_b21666: SM_b21666 - hypothetical protein, at 955,649 to 955,867 _b21666 Position (kb) 953 954 955Strain fitness (log2 ratio) -2 -1 0 1 2 3at 952.987 kb on - strand, within SM_b21201at 953.046 kb on + strand, within SM_b21201at 953.047 kb on - strand, within SM_b21201at 953.110 kb on - strand, within SM_b21201at 953.209 kb on - strand, within SM_b21201at 953.209 kb on - strand, within SM_b21201at 953.211 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.245 kb on - strand, within SM_b21201at 953.245 kb on - strand, within SM_b21201at 953.245 kb on - strand, within SM_b21201at 953.331 kb on + strand, within SM_b21201at 953.331 kb on + strand, within SM_b21201at 953.332 kb on - strand, within SM_b21201at 953.332 kb on - strand, within SM_b21201at 953.332 kb on - strand, within SM_b21201at 953.373 kb on + strand, within SM_b21201at 953.373 kb on + strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.587 kb on + strandat 953.587 kb on + strandat 953.587 kb on + strandat 953.587 kb on + strandat 953.587 kb on + strandat 953.588 kb on - strandat 953.588 kb on - strandat 953.590 kb on - strandat 953.590 kb on - strandat 953.590 kb on - strandat 953.674 kb on - strandat 953.750 kb on + strandat 953.751 kb on + strandat 953.752 kb on - strandat 953.984 kb on + strandat 953.985 kb on - strandat 954.088 kb on + strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.097 kb on + strand, within SM_b21202at 954.097 kb on + strand, within SM_b21202at 954.097 kb on + strand, within SM_b21202at 954.098 kb on - strand, within SM_b21202at 954.098 kb on - strand, within SM_b21202at 954.098 kb on - strand, within SM_b21202at 954.100 kb on + strand, within SM_b21202at 954.100 kb on + strand, within SM_b21202at 954.101 kb on - strand, within SM_b21202at 954.101 kb on - strand, within SM_b21202at 954.139 kb on + strand, within SM_b21202at 954.428 kb on + strand, within SM_b21202at 954.428 kb on + strand, within SM_b21202at 954.434 kb on + strand, within SM_b21202at 954.435 kb on - strand, within SM_b21202at 954.435 kb on - strand, within SM_b21202at 954.478 kb on + strand, within SM_b21202at 954.706 kb on + strand, within SM_b21202at 954.883 kb on + strandat 955.001 kb on + strandat 955.001 kb on + strandat 955.002 kb on - strandat 955.002 kb on - strandat 955.002 kb on - strandat 955.002 kb on - strandat 955.117 kb on + strand, within SM_b21203at 955.117 kb on + strand, within SM_b21203at 955.143 kb on + strand, within SM_b21203at 955.193 kb on + strand, within SM_b21203at 955.193 kb on + strand, within SM_b21203at 955.194 kb on - strand, within SM_b21203at 955.292 kb on + strand, within SM_b21203at 955.293 kb on - strand, within SM_b21203at 955.487 kb on + strand, within SM_b21203at 955.487 kb on + strand, within SM_b21203at 955.487 kb on + strand, within SM_b21203at 955.488 kb on - strand, within SM_b21203at 955.488 kb on - strand, within SM_b21203at 955.611 kb on - strandat 955.611 kb on - strandat 955.635 kb on + strandat 955.636 kb on - strandat 955.776 kb on + strand, within SM_b21666at 955.870 kb on + strandat 955.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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952,987 - SM_b21201 0.62 -0.3
953,046 + SM_b21201 0.65 -0.2
953,047 - SM_b21201 0.65 +0.8
953,110 - SM_b21201 0.69 +0.3
953,209 - SM_b21201 0.74 +0.9
953,209 - SM_b21201 0.74 -0.2
953,211 + SM_b21201 0.74 -0.3
953,244 + SM_b21201 0.76 -0.1
953,244 + SM_b21201 0.76 -0.1
953,244 + SM_b21201 0.76 +0.5
953,244 + SM_b21201 0.76 -0.6
953,245 - SM_b21201 0.76 -0.0
953,245 - SM_b21201 0.76 +0.0
953,245 - SM_b21201 0.76 -0.5
953,331 + SM_b21201 0.81 +0.3
953,331 + SM_b21201 0.81 +0.1
953,332 - SM_b21201 0.81 +0.1
953,332 - SM_b21201 0.81 -0.3
953,332 - SM_b21201 0.81 -0.1
953,373 + SM_b21201 0.83 -1.7
953,373 + SM_b21201 0.83 -0.2
953,374 - SM_b21201 0.83 -1.1
953,374 - SM_b21201 0.83 -0.0
953,374 - SM_b21201 0.83 -0.1
953,374 - SM_b21201 0.83 +0.6
953,374 - SM_b21201 0.83 -0.6
953,374 - SM_b21201 0.83 +0.1
953,374 - SM_b21201 0.83 -0.2
953,587 + +0.2
953,587 + +0.2
953,587 + +0.3
953,587 + +3.0
953,587 + -0.3
953,588 - +0.8
953,588 - -0.2
953,590 - -0.2
953,590 - -0.0
953,590 - +0.0
953,674 - -2.1
953,750 + +0.2
953,751 + -0.3
953,752 - -0.2
953,984 + -1.0
953,985 - -1.5
954,088 + SM_b21202 0.14 +0.5
954,089 - SM_b21202 0.15 +0.8
954,089 - SM_b21202 0.15 +0.4
954,089 - SM_b21202 0.15 +0.0
954,089 - SM_b21202 0.15 +0.6
954,097 + SM_b21202 0.15 -0.7
954,097 + SM_b21202 0.15 +0.3
954,097 + SM_b21202 0.15 -0.0
954,098 - SM_b21202 0.16 +0.3
954,098 - SM_b21202 0.16 +0.4
954,098 - SM_b21202 0.16 +1.5
954,100 + SM_b21202 0.16 -0.8
954,100 + SM_b21202 0.16 -0.3
954,101 - SM_b21202 0.16 -0.2
954,101 - SM_b21202 0.16 +0.2
954,139 + SM_b21202 0.20 -0.0
954,428 + SM_b21202 0.51 -0.3
954,428 + SM_b21202 0.51 +0.7
954,434 + SM_b21202 0.52 +1.1
954,435 - SM_b21202 0.52 +0.4
954,435 - SM_b21202 0.52 -0.1
954,478 + SM_b21202 0.56 +0.2
954,706 + SM_b21202 0.81 +0.8
954,883 + +0.5
955,001 + +0.1
955,001 + -0.3
955,002 - +0.1
955,002 - -0.4
955,002 - +0.1
955,002 - +0.3
955,117 + SM_b21203 0.22 +1.6
955,117 + SM_b21203 0.22 +0.1
955,143 + SM_b21203 0.26 -0.6
955,193 + SM_b21203 0.34 +1.0
955,193 + SM_b21203 0.34 +0.5
955,194 - SM_b21203 0.34 -0.2
955,292 + SM_b21203 0.51 +0.3
955,293 - SM_b21203 0.51 -0.0
955,487 + SM_b21203 0.83 -0.1
955,487 + SM_b21203 0.83 -0.3
955,487 + SM_b21203 0.83 +0.1
955,488 - SM_b21203 0.83 -0.4
955,488 - SM_b21203 0.83 +0.0
955,611 - +0.8
955,611 - +0.1
955,635 + -0.2
955,636 - -0.1
955,776 + SM_b21666 0.58 -0.2
955,870 + +0.5
955,871 - +0.6

Or see this region's nucleotide sequence