Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21037 and SM_b21038 are separated by 6 nucleotides SM_b21038 and SM_b21039 are separated by 13 nucleotides SM_b21039 and SM_b21040 overlap by 4 nucleotides
SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243
_b21037
SM_b21038: SM_b21038 - oligopeptidemurein peptide ABC transporter permease, at 656,250 to 657,227
_b21038
SM_b21039: SM_b21039 - oligopeptidemurein peptide ABC transporter permease, at 657,241 to 658,116
_b21039
SM_b21040: SM_b21040 - oligopeptidemurein peptide ABC transporter ATP-binding protein, at 658,113 to 659,786
_b21040
Position (kb) 657
658
659 Strain fitness (log2 ratio) -1
0
1
2 at 656.384 kb on + strand, within SM_b21038 at 656.448 kb on + strand, within SM_b21038 at 656.449 kb on - strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.501 kb on - strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.812 kb on + strand, within SM_b21038 at 656.813 kb on - strand, within SM_b21038 at 656.837 kb on - strand, within SM_b21038 at 656.909 kb on - strand, within SM_b21038 at 656.913 kb on + strand, within SM_b21038 at 657.189 kb on + strand at 657.190 kb on - strand at 657.190 kb on - strand at 657.322 kb on + strand at 657.322 kb on + strand at 657.323 kb on - strand at 657.323 kb on - strand at 657.389 kb on - strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.436 kb on + strand, within SM_b21039 at 657.437 kb on - strand, within SM_b21039 at 657.443 kb on - strand, within SM_b21039 at 657.494 kb on - strand, within SM_b21039 at 657.690 kb on - strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.781 kb on + strand, within SM_b21039 at 657.782 kb on - strand, within SM_b21039 at 657.875 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 658.006 kb on + strand, within SM_b21039 at 658.724 kb on - strand, within SM_b21040 at 658.724 kb on - strand, within SM_b21040 at 658.882 kb on - strand, within SM_b21040 at 658.978 kb on + strand, within SM_b21040 at 658.979 kb on - strand, within SM_b21040
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 656,384 + SM_b21038 0.14 +0.1 656,448 + SM_b21038 0.20 -0.3 656,449 - SM_b21038 0.20 -0.6 656,496 + SM_b21038 0.25 -0.2 656,496 + SM_b21038 0.25 +0.2 656,496 + SM_b21038 0.25 +0.2 656,496 + SM_b21038 0.25 +0.1 656,497 - SM_b21038 0.25 -0.0 656,497 - SM_b21038 0.25 -0.7 656,497 - SM_b21038 0.25 -0.5 656,497 - SM_b21038 0.25 +0.2 656,497 - SM_b21038 0.25 +0.2 656,501 - SM_b21038 0.26 +0.8 656,502 + SM_b21038 0.26 +0.9 656,502 + SM_b21038 0.26 +0.4 656,502 + SM_b21038 0.26 -0.5 656,502 + SM_b21038 0.26 -0.1 656,503 - SM_b21038 0.26 +0.3 656,503 - SM_b21038 0.26 -0.2 656,503 - SM_b21038 0.26 +1.2 656,503 - SM_b21038 0.26 +0.5 656,503 - SM_b21038 0.26 +0.3 656,503 - SM_b21038 0.26 +0.0 656,503 - SM_b21038 0.26 -0.5 656,503 - SM_b21038 0.26 -0.0 656,812 + SM_b21038 0.57 +0.2 656,813 - SM_b21038 0.58 -0.0 656,837 - SM_b21038 0.60 -0.1 656,909 - SM_b21038 0.67 -0.8 656,913 + SM_b21038 0.68 -0.2 657,189 + +1.5 657,190 - +0.2 657,190 - +0.7 657,322 + -0.3 657,322 + +0.1 657,323 - +1.1 657,323 - -0.3 657,389 - SM_b21039 0.17 -0.1 657,417 + SM_b21039 0.20 +0.1 657,417 + SM_b21039 0.20 +0.0 657,436 + SM_b21039 0.22 +0.3 657,437 - SM_b21039 0.22 +1.3 657,443 - SM_b21039 0.23 +0.4 657,494 - SM_b21039 0.29 +0.4 657,690 - SM_b21039 0.51 -0.0 657,733 + SM_b21039 0.56 +1.4 657,733 + SM_b21039 0.56 +0.0 657,734 - SM_b21039 0.56 -0.3 657,734 - SM_b21039 0.56 -0.3 657,734 - SM_b21039 0.56 +0.4 657,781 + SM_b21039 0.62 +0.1 657,782 - SM_b21039 0.62 +0.0 657,875 + SM_b21039 0.72 +0.1 657,988 + SM_b21039 0.85 +0.8 657,988 + SM_b21039 0.85 +1.8 658,006 + SM_b21039 0.87 -0.5 658,724 - SM_b21040 0.36 -0.9 658,724 - SM_b21040 0.36 -0.2 658,882 - SM_b21040 0.46 +0.5 658,978 + SM_b21040 0.52 -0.1 658,979 - SM_b21040 0.52 -0.6
Or see this region's nucleotide sequence