Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20937 and SM_b20938 are separated by 46 nucleotides SM_b20938 and SM_b20939 overlap by 4 nucleotides SM_b20939 and SM_b20940 overlap by 4 nucleotides
SM_b20937: SM_b20937 - ABC transporter ATP-binding protein/permease, at 1,161,991 to 1,163,811
_b20937
SM_b20938: SM_b20938 - hypothetical protein, at 1,163,858 to 1,164,595
_b20938
SM_b20939: SM_b20939 - 6-pyruvoyl-tetrahydropterin synthase, at 1,164,592 to 1,164,951
_b20939
SM_b20940: SM_b20940 - hypothetical protein, at 1,164,948 to 1,165,658
_b20940
Position (kb)
1163
1164
1165 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1162.874 kb on - strand, within SM_b20937 at 1162.899 kb on + strand, within SM_b20937 at 1162.900 kb on - strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1163.206 kb on - strand, within SM_b20937 at 1163.838 kb on + strand at 1164.019 kb on + strand, within SM_b20938 at 1164.020 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.082 kb on - strand, within SM_b20938 at 1164.087 kb on + strand, within SM_b20938 at 1164.088 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.324 kb on - strand at 1164.324 kb on - strand, within SM_b20938 at 1164.432 kb on + strand, within SM_b20938 at 1164.603 kb on - strand at 1164.677 kb on + strand, within SM_b20939 at 1164.763 kb on - strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.765 kb on - strand at 1164.791 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.103 kb on - strand, within SM_b20940 at 1165.190 kb on - strand, within SM_b20940 at 1165.207 kb on + strand, within SM_b20940 at 1165.273 kb on + strand, within SM_b20940 at 1165.274 kb on - strand, within SM_b20940 at 1165.408 kb on + strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.541 kb on + strand, within SM_b20940 at 1165.542 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,162,874 - SM_b20937 0.48 -1.0 1,162,899 + SM_b20937 0.50 -0.8 1,162,900 - SM_b20937 0.50 +0.1 1,162,953 + SM_b20937 0.53 +0.1 1,162,953 + SM_b20937 0.53 -0.6 1,162,953 + SM_b20937 0.53 -0.0 1,162,954 - SM_b20937 0.53 -0.3 1,162,954 - SM_b20937 0.53 +0.4 1,162,954 - SM_b20937 0.53 -0.1 1,162,954 - SM_b20937 0.53 -0.0 1,162,954 - SM_b20937 0.53 +0.0 1,163,206 - SM_b20937 0.67 +0.7 1,163,838 + -0.5 1,164,019 + SM_b20938 0.22 -0.3 1,164,020 - SM_b20938 0.22 -0.8 1,164,040 - SM_b20938 0.25 +0.7 1,164,040 - SM_b20938 0.25 +0.3 1,164,081 + SM_b20938 0.30 +0.5 1,164,081 + SM_b20938 0.30 +0.2 1,164,081 + SM_b20938 0.30 -0.7 1,164,081 + SM_b20938 0.30 +1.8 1,164,082 - SM_b20938 0.30 -0.7 1,164,087 + SM_b20938 0.31 -5.4 1,164,088 - SM_b20938 0.31 +0.2 1,164,120 - SM_b20938 0.36 +0.8 1,164,120 - SM_b20938 0.36 -1.2 1,164,323 + SM_b20938 0.63 -1.2 1,164,323 + SM_b20938 0.63 +0.8 1,164,324 - -1.0 1,164,324 - SM_b20938 0.63 +0.6 1,164,432 + SM_b20938 0.78 -0.2 1,164,603 - -1.5 1,164,677 + SM_b20939 0.24 +0.2 1,164,763 - SM_b20939 0.47 +0.2 1,164,764 + SM_b20939 0.48 -0.1 1,164,764 + SM_b20939 0.48 -0.1 1,164,764 + SM_b20939 0.48 +0.2 1,164,765 - +0.5 1,164,791 + SM_b20939 0.55 +1.1 1,164,851 + SM_b20939 0.72 +1.1 1,164,851 + SM_b20939 0.72 +0.3 1,164,851 + SM_b20939 0.72 +0.4 1,164,851 + SM_b20939 0.72 -0.2 1,164,851 + SM_b20939 0.72 +0.8 1,164,851 + SM_b20939 0.72 +0.2 1,164,852 - SM_b20939 0.72 +0.2 1,164,852 - SM_b20939 0.72 +3.1 1,165,100 + SM_b20940 0.21 -0.5 1,165,100 + SM_b20940 0.21 -0.3 1,165,100 + SM_b20940 0.21 -0.0 1,165,100 + SM_b20940 0.21 +0.8 1,165,101 - SM_b20940 0.22 +0.1 1,165,101 - SM_b20940 0.22 -0.1 1,165,102 + SM_b20940 0.22 +1.3 1,165,102 + SM_b20940 0.22 +0.5 1,165,102 + SM_b20940 0.22 -0.2 1,165,102 + SM_b20940 0.22 +0.5 1,165,103 - SM_b20940 0.22 +1.2 1,165,190 - SM_b20940 0.34 -0.2 1,165,207 + SM_b20940 0.36 -0.0 1,165,273 + SM_b20940 0.46 +0.2 1,165,274 - SM_b20940 0.46 -0.0 1,165,408 + SM_b20940 0.65 +0.0 1,165,409 - SM_b20940 0.65 -0.0 1,165,409 - SM_b20940 0.65 +0.6 1,165,541 + SM_b20940 0.83 -0.1 1,165,542 - SM_b20940 0.84 -0.4 1,165,559 - SM_b20940 0.86 -0.1 1,165,559 - SM_b20940 0.86 -0.4
Or see this region's nucleotide sequence