Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20673

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20672 and SM_b20673 overlap by 4 nucleotidesSM_b20673 and SM_b20674 are separated by 211 nucleotides SM_b20672: SM_b20672 - sugar uptake ABC transporter permease, at 1,473,003 to 1,474,325 _b20672 SM_b20673: SM_b20673 - sugar uptake ABC transporter ATP-binding protein, at 1,474,322 to 1,475,902 _b20673 SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133 _b20674 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -1 0 1 2at 1473.379 kb on + strand, within SM_b20672at 1473.379 kb on + strand, within SM_b20672at 1473.421 kb on + strand, within SM_b20672at 1473.421 kb on + strand, within SM_b20672at 1473.422 kb on - strand, within SM_b20672at 1473.422 kb on - strand, within SM_b20672at 1473.422 kb on - strand, within SM_b20672at 1473.493 kb on + strand, within SM_b20672at 1473.499 kb on + strand, within SM_b20672at 1473.500 kb on - strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.562 kb on - strand, within SM_b20672at 1473.605 kb on + strand, within SM_b20672at 1473.605 kb on + strand, within SM_b20672at 1473.636 kb on - strand, within SM_b20672at 1473.929 kb on + strand, within SM_b20672at 1473.930 kb on - strand, within SM_b20672at 1473.978 kb on + strand, within SM_b20672at 1473.978 kb on + strand, within SM_b20672at 1473.979 kb on - strand, within SM_b20672at 1474.033 kb on + strand, within SM_b20672at 1474.033 kb on + strand, within SM_b20672at 1474.120 kb on - strand, within SM_b20672at 1474.177 kb on - strand, within SM_b20672at 1474.288 kb on + strandat 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.527 kb on + strand, within SM_b20673at 1474.528 kb on - strand, within SM_b20673at 1474.528 kb on - strand, within SM_b20673at 1475.082 kb on + strand, within SM_b20673at 1475.167 kb on + strand, within SM_b20673at 1475.167 kb on + strand, within SM_b20673at 1475.272 kb on + strand, within SM_b20673at 1475.272 kb on + strand, within SM_b20673at 1475.272 kb on + strand, within SM_b20673at 1475.273 kb on - strand, within SM_b20673at 1475.274 kb on + strand, within SM_b20673at 1475.275 kb on - strand, within SM_b20673at 1475.691 kb on + strand, within SM_b20673at 1475.691 kb on + strand, within SM_b20673at 1475.700 kb on + strand, within SM_b20673at 1475.890 kb on + strandat 1476.232 kb on + strand, within SM_b20674at 1476.237 kb on + strand, within SM_b20674at 1476.238 kb on - strand, within SM_b20674at 1476.238 kb on - strand, within SM_b20674at 1476.289 kb on + strand, within SM_b20674at 1476.289 kb on + strand, within SM_b20674at 1476.289 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.646 kb on - strand, within SM_b20674at 1476.777 kb on + strand, within SM_b20674

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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1,473,379 + SM_b20672 0.28 +0.2
1,473,379 + SM_b20672 0.28 +0.6
1,473,421 + SM_b20672 0.32 +0.3
1,473,421 + SM_b20672 0.32 -0.7
1,473,422 - SM_b20672 0.32 -0.3
1,473,422 - SM_b20672 0.32 +0.0
1,473,422 - SM_b20672 0.32 -1.0
1,473,493 + SM_b20672 0.37 -1.3
1,473,499 + SM_b20672 0.37 +0.4
1,473,500 - SM_b20672 0.38 -0.1
1,473,561 + SM_b20672 0.42 -0.8
1,473,561 + SM_b20672 0.42 +0.8
1,473,561 + SM_b20672 0.42 -0.4
1,473,561 + SM_b20672 0.42 +0.6
1,473,562 - SM_b20672 0.42 -0.4
1,473,605 + SM_b20672 0.46 +0.4
1,473,605 + SM_b20672 0.46 -0.3
1,473,636 - SM_b20672 0.48 -0.0
1,473,929 + SM_b20672 0.70 +0.1
1,473,930 - SM_b20672 0.70 +0.1
1,473,978 + SM_b20672 0.74 -0.1
1,473,978 + SM_b20672 0.74 +0.0
1,473,979 - SM_b20672 0.74 -0.6
1,474,033 + SM_b20672 0.78 -0.7
1,474,033 + SM_b20672 0.78 +0.1
1,474,120 - SM_b20672 0.84 +0.0
1,474,177 - SM_b20672 0.89 +0.0
1,474,288 + +0.3
1,474,527 + SM_b20673 0.13 +0.9
1,474,527 + SM_b20673 0.13 -0.9
1,474,527 + SM_b20673 0.13 -0.9
1,474,527 + SM_b20673 0.13 -0.0
1,474,527 + SM_b20673 0.13 -0.2
1,474,527 + SM_b20673 0.13 -0.6
1,474,527 + SM_b20673 0.13 -0.0
1,474,527 + SM_b20673 0.13 +0.3
1,474,528 - SM_b20673 0.13 +0.8
1,474,528 - SM_b20673 0.13 -0.3
1,475,082 + SM_b20673 0.48 +0.7
1,475,167 + SM_b20673 0.53 +0.2
1,475,167 + SM_b20673 0.53 -1.1
1,475,272 + SM_b20673 0.60 -0.0
1,475,272 + SM_b20673 0.60 +0.7
1,475,272 + SM_b20673 0.60 -0.6
1,475,273 - SM_b20673 0.60 -0.6
1,475,274 + SM_b20673 0.60 -0.3
1,475,275 - SM_b20673 0.60 -0.7
1,475,691 + SM_b20673 0.87 +0.1
1,475,691 + SM_b20673 0.87 +0.2
1,475,700 + SM_b20673 0.87 -0.1
1,475,890 + -0.4
1,476,232 + SM_b20674 0.12 +0.5
1,476,237 + SM_b20674 0.12 +0.1
1,476,238 - SM_b20674 0.12 +0.6
1,476,238 - SM_b20674 0.12 +0.3
1,476,289 + SM_b20674 0.17 -0.3
1,476,289 + SM_b20674 0.17 -0.3
1,476,289 + SM_b20674 0.17 -0.1
1,476,612 + SM_b20674 0.49 -0.1
1,476,612 + SM_b20674 0.49 +0.2
1,476,612 + SM_b20674 0.49 -0.3
1,476,612 + SM_b20674 0.49 -0.1
1,476,612 + SM_b20674 0.49 +0.5
1,476,613 - SM_b20674 0.49 +0.4
1,476,613 - SM_b20674 0.49 -1.1
1,476,613 - SM_b20674 0.49 -0.7
1,476,613 - SM_b20674 0.49 +2.2
1,476,613 - SM_b20674 0.49 -0.4
1,476,615 - SM_b20674 0.49 -0.2
1,476,615 - SM_b20674 0.49 +0.1
1,476,615 - SM_b20674 0.49 +0.5
1,476,615 - SM_b20674 0.49 -0.3
1,476,646 - SM_b20674 0.52 -0.9
1,476,777 + SM_b20674 0.65 +1.0

Or see this region's nucleotide sequence