Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20672 and SM_b20673 overlap by 4 nucleotides SM_b20673 and SM_b20674 are separated by 211 nucleotides
SM_b20672: SM_b20672 - sugar uptake ABC transporter permease, at 1,473,003 to 1,474,325
_b20672
SM_b20673: SM_b20673 - sugar uptake ABC transporter ATP-binding protein, at 1,474,322 to 1,475,902
_b20673
SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133
_b20674
Position (kb)
1474
1475
1476 Strain fitness (log2 ratio)
-1
0
1
2 at 1473.379 kb on + strand, within SM_b20672 at 1473.379 kb on + strand, within SM_b20672 at 1473.421 kb on + strand, within SM_b20672 at 1473.421 kb on + strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.493 kb on + strand, within SM_b20672 at 1473.499 kb on + strand, within SM_b20672 at 1473.500 kb on - strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.562 kb on - strand, within SM_b20672 at 1473.605 kb on + strand, within SM_b20672 at 1473.605 kb on + strand, within SM_b20672 at 1473.636 kb on - strand, within SM_b20672 at 1473.929 kb on + strand, within SM_b20672 at 1473.930 kb on - strand, within SM_b20672 at 1473.978 kb on + strand, within SM_b20672 at 1473.978 kb on + strand, within SM_b20672 at 1473.979 kb on - strand, within SM_b20672 at 1474.033 kb on + strand, within SM_b20672 at 1474.033 kb on + strand, within SM_b20672 at 1474.120 kb on - strand, within SM_b20672 at 1474.177 kb on - strand, within SM_b20672 at 1474.288 kb on + strand at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.528 kb on - strand, within SM_b20673 at 1474.528 kb on - strand, within SM_b20673 at 1475.082 kb on + strand, within SM_b20673 at 1475.167 kb on + strand, within SM_b20673 at 1475.167 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.273 kb on - strand, within SM_b20673 at 1475.274 kb on + strand, within SM_b20673 at 1475.275 kb on - strand, within SM_b20673 at 1475.691 kb on + strand, within SM_b20673 at 1475.691 kb on + strand, within SM_b20673 at 1475.700 kb on + strand, within SM_b20673 at 1475.890 kb on + strand at 1476.232 kb on + strand, within SM_b20674 at 1476.237 kb on + strand, within SM_b20674 at 1476.238 kb on - strand, within SM_b20674 at 1476.238 kb on - strand, within SM_b20674 at 1476.289 kb on + strand, within SM_b20674 at 1476.289 kb on + strand, within SM_b20674 at 1476.289 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.646 kb on - strand, within SM_b20674 at 1476.777 kb on + strand, within SM_b20674
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,473,379 + SM_b20672 0.28 +0.2 1,473,379 + SM_b20672 0.28 +0.6 1,473,421 + SM_b20672 0.32 +0.3 1,473,421 + SM_b20672 0.32 -0.7 1,473,422 - SM_b20672 0.32 -0.3 1,473,422 - SM_b20672 0.32 +0.0 1,473,422 - SM_b20672 0.32 -1.0 1,473,493 + SM_b20672 0.37 -1.3 1,473,499 + SM_b20672 0.37 +0.4 1,473,500 - SM_b20672 0.38 -0.1 1,473,561 + SM_b20672 0.42 -0.8 1,473,561 + SM_b20672 0.42 +0.8 1,473,561 + SM_b20672 0.42 -0.4 1,473,561 + SM_b20672 0.42 +0.6 1,473,562 - SM_b20672 0.42 -0.4 1,473,605 + SM_b20672 0.46 +0.4 1,473,605 + SM_b20672 0.46 -0.3 1,473,636 - SM_b20672 0.48 -0.0 1,473,929 + SM_b20672 0.70 +0.1 1,473,930 - SM_b20672 0.70 +0.1 1,473,978 + SM_b20672 0.74 -0.1 1,473,978 + SM_b20672 0.74 +0.0 1,473,979 - SM_b20672 0.74 -0.6 1,474,033 + SM_b20672 0.78 -0.7 1,474,033 + SM_b20672 0.78 +0.1 1,474,120 - SM_b20672 0.84 +0.0 1,474,177 - SM_b20672 0.89 +0.0 1,474,288 + +0.3 1,474,527 + SM_b20673 0.13 +0.9 1,474,527 + SM_b20673 0.13 -0.9 1,474,527 + SM_b20673 0.13 -0.9 1,474,527 + SM_b20673 0.13 -0.0 1,474,527 + SM_b20673 0.13 -0.2 1,474,527 + SM_b20673 0.13 -0.6 1,474,527 + SM_b20673 0.13 -0.0 1,474,527 + SM_b20673 0.13 +0.3 1,474,528 - SM_b20673 0.13 +0.8 1,474,528 - SM_b20673 0.13 -0.3 1,475,082 + SM_b20673 0.48 +0.7 1,475,167 + SM_b20673 0.53 +0.2 1,475,167 + SM_b20673 0.53 -1.1 1,475,272 + SM_b20673 0.60 -0.0 1,475,272 + SM_b20673 0.60 +0.7 1,475,272 + SM_b20673 0.60 -0.6 1,475,273 - SM_b20673 0.60 -0.6 1,475,274 + SM_b20673 0.60 -0.3 1,475,275 - SM_b20673 0.60 -0.7 1,475,691 + SM_b20673 0.87 +0.1 1,475,691 + SM_b20673 0.87 +0.2 1,475,700 + SM_b20673 0.87 -0.1 1,475,890 + -0.4 1,476,232 + SM_b20674 0.12 +0.5 1,476,237 + SM_b20674 0.12 +0.1 1,476,238 - SM_b20674 0.12 +0.6 1,476,238 - SM_b20674 0.12 +0.3 1,476,289 + SM_b20674 0.17 -0.3 1,476,289 + SM_b20674 0.17 -0.3 1,476,289 + SM_b20674 0.17 -0.1 1,476,612 + SM_b20674 0.49 -0.1 1,476,612 + SM_b20674 0.49 +0.2 1,476,612 + SM_b20674 0.49 -0.3 1,476,612 + SM_b20674 0.49 -0.1 1,476,612 + SM_b20674 0.49 +0.5 1,476,613 - SM_b20674 0.49 +0.4 1,476,613 - SM_b20674 0.49 -1.1 1,476,613 - SM_b20674 0.49 -0.7 1,476,613 - SM_b20674 0.49 +2.2 1,476,613 - SM_b20674 0.49 -0.4 1,476,615 - SM_b20674 0.49 -0.2 1,476,615 - SM_b20674 0.49 +0.1 1,476,615 - SM_b20674 0.49 +0.5 1,476,615 - SM_b20674 0.49 -0.3 1,476,646 - SM_b20674 0.52 -0.9 1,476,777 + SM_b20674 0.65 +1.0
Or see this region's nucleotide sequence